SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20438

Length: 917 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene20438 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	beta-ketoacyl-ACP synthetase I-2 [Glycine max]	-	-	0.0	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Beta-ketoacyl-ACP synthase II	-	-	1.296e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-ketoacyl-acyl-carrier-protein synthase I.	EC:2.3.1.41	-	6.647e-33	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fatty acid biosynthesis	00061		6.647e-33	%
Sma3	Metabolic pathways	01100		6.647e-33	%

Source	Gene names
Sma3	AT1G74960; At1g74960; At2g04540; At5g46290; B1056G08.109; CHLREDRAFT_139619; CHLREDRAFT_181037; CHLREDRAFT_205887; CwKASII1; CwKASII2; F25A4.7; FABFa; FABFb; GSVIVT00003432001; GSVIVT00006722001; GSVIVT00006723001; GSVIVT00016391001; GSVIVT00025980001; GS

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	3-oxoacyl-[acyl-carrier-protein] synthase activity	GO:0004315	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transferase activity, transferring acyl groups other than amino-acyl groups	GO:0016747	Molecular Function	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-
Sma3	unsaturated fatty acid biosynthetic process	GO:0006636	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Beta-ketoacyl synthase	IPR000794	-	-
Sma3	Thiolase	IPR002155	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Beta-ketoacyl synthase, N-terminal	IPR014030	-	-
Sma3	Beta-ketoacyl synthase, C-terminal	IPR014031	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-
Sma3	3-oxoacyl-[acyl-carrier-protein] synthase 2	IPR017568	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G46290.3	KASI 3-ketoacyl-acyl carrier protein synthase I chr5:18774439-18776629 REVERSE LENGTH=489	76%
RefSeq	Arabidopsis thaliana	NP_199441.1	3-oxoacyl-[acyl-carrier-protein] synthase I [Arabidopsis thaliana]	81%
RefSeq	Populus trichocarpa	XP_002303661.1	predicted protein [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABC3

Fln msg: your sequence is shorter than subject: 280 - 481

Fln protein: IPYSITNMGSALLAIDTGFMGPTYSISTACATANYCLHAAANHIRRGEADIMLAGGTEASILPSGVGGFIACKALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHARKRGAPIIAEYLGGAVSCDAYHMTNPRPDGHGVSICIRKCLEDAGVSPEEVNYINAHATSTQTGDLTEVTAIKNTFKDTSSIKMNGTKSMIGHCLGAASALEAIATIKAITTGWLHPTINQFNIEPNVTIDTVPNIKKQHEVHVGISNSFGFGGHNSVVAFAPFNP*

Protein Length: 281

Fln nts: ATTCCTTATTCCATCACGAACATGGGATCTGCATTGTTGGCAATTGATACGGGATTTATGGGCCCGACCTACTCAATTTCAACCGCATGTGCAACAGCAAATTACTGTCTACATGCAGCTGCAAATCATATTCGCAGAGGTGAAGCAGATATCATGCTTGCAGGTGGCACAGAAGCTTCCATTTTGCCGTCTGGTGTAGGTGGATTTATCGCTTGTAAGGCCCTTTCACAGAGGAATGACGACCCACAGACAGCTTCCAGACCGTGGGACAAGGATCGTGATGGCTTTGTCATGGGTGAAGGTGCTGGCGTGCTGGTTATGGAAAGTCTTGAGCATGCAAGGAAGCGAGGAGCCCCCATAATAGCCGAGTACCTCGGTGGAGCTGTCAGTTGTGATGCTTATCACATGACGAATCCACGTCCTGATGGGCATGGAGTTTCAATCTGCATTCGGAAATGCCTGGAAGATGCAGGAGTTTCACCAGAGGAGGTCAATTATATCAATGCTCATGCAACATCGACCCAGACAGGAGATCTCACAGAGGTTACAGCTATCAAGAACACTTTCAAGGATACTTCTAGCATCAAAATGAATGGAACAAAGTCTATGATTGGGCATTGTCTTGGAGCTGCTAGTGCATTGGAAGCAATTGCAACTATAAAGGCTATCACTACTGGGTGGCTTCACCCTACAATTAATCAATTTAATATCGAGCCTAATGTTACAATTGATACAGTGCCAAATATAAAGAAGCAACATGAAGTGCATGTTGGTATCTCAAACTCGTTTGGATTTGGTGGGCACAACTCAGTGGTAGCTTTTGCTCCATTCAATCCTTAA___CAAGCTATCTACATTATTTTCTCAAAATAGCTGTTTTTCTATTGAATTCCCATAAATTGATGCAATGTAGTAATCTT

Fln Alignment:

Contig20438___IPYSITNMGSALLAIDTGFMGPTYSISTACATANYCLHAAANHIRRGEADIMLAGGTEASILPSGVGGFIACKALSQRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHARKRGAPIIAEYLGGAVSCDAYHMTNPRPDGHGVSICIRKCLEDAGVSPEEVNYINAHATSTQTGDLTEVTAIKNTFKDTSSIKMNGTKSMIGHCLGAASALEAIATIKAITTGWLHPTINQFNIEPNVTIDTVPNIKKQHEVHVGISNSFGFGGHNSVVAFAPFNP
D5ABC3_______________IPYTISNMGSALLAIDTGLMGPNYSISTACATANYCLYAAANHIRRGEADIMLAGGTEAGIVPVSVGGFIALRALSHRNDDPQTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVTCDAHHMTDPRSDGLGVSMCIRKSLEDAGVSPEEVNYINAHATSTRAGDLAEVNAIKKVFTNTSSIKMNGTKSMIGHSFGAAGALEAIATIKAITTGWLHPTINQFNTEPDVTIDTVPNVKKQHEVHVGISNSFGFGGHNSVVTFAPFNP

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
594		14		85	0.993533
600	85		14		0.993533
601	85			14	0.993533
670		20		80	0.995493
715		83	16		0.994512
716		83		16	0.994512
756		20		80	0.995493
766			80	20	0.995493
814	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain