SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20414

Length: 1032 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene20414

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-amylase (Fragment) n=2 Tax=Malpighiales RepID=B9HSW9_POPTR	-	-	70%
FL-Next	sp=Beta-amylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Sma3	Beta-amylase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-amylase.	EC:3.2.1.2	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%
Sma3	Metabolic pathways	01100		0.0	%

Source	Gene names
Sma3	AMY1; AMYB; AMYB1; AMYB2; AMYB3; AT4G15210; AT4g00490; AT4g17090; AT5G55700; Amy2; At2g32290; At3g23920; At4g15210; At4g17090; At5g55700; BA1; BAM1; BAM2; BMY1; Bamy2; Bmy1; CHLREDRAFT_112511; CHLREDRAFT_129211; CHLREDRAFT_183141; F6N23.1; GSVIVT000012100

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	beta-amylase activity	GO:0016161	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	maltose biosynthetic process	GO:0000024	Biological Process	-
Sma3	polysaccharide catabolic process	GO:0000272	Biological Process	-
Sma3	starch catabolic process	GO:0005983	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 14B, plant	IPR001371	-	-
Sma3	Glycoside hydrolase, family 14	IPR001554	-	-
Sma3	BZR1, transcriptional repressor	IPR008540	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 14, conserved site	IPR018238	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G23920.1	BAM1, BMY7, TR-BAMY beta-amylase 1 chr3:8641722-8644199 FORWARD LENGTH=575	66%
RefSeq	Arabidopsis thaliana	NP_189034.1	beta-amylase 1 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002314522.1	predicted protein, partial [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVE4

Fln msg: your sequence is shorter than subject: 313 - 492

Fln protein: LSMIIQEIQVGMGPAGELRYPSYPESNGTWRFPGIGAFQCYDKYMVSNLKAVAEAAGKKEWGNGGPSDAGHYNNWPEDTPFFRRDGGWNTPYGEFFLKWYSGMLLDHGERILTAAEAIFRGTGVKLSGKVAGIHWHYGTRSHAPELTAGYYNTRFRDGYRPIASMFARHGVIFNFTCIEMKDWEQPGDAQCSPEKLIKQVILATRKAGSPLAGENALPRFDEGAYDQIVRNANLRLAEDGHNTIVEPMCAFTYLRMNQHLFQPENWRLFVSFVRKMAQGGVSHSWEQEHGDTDSFVYATVPLVQEAAALLHN*

Protein Length: 314

Fln nts: ATTTGTCTATGATAATACAGGAAATTCAAGTGGGAATGGGTCCTGCAGGAGAGCTGAGGTATCCATCTTATCCTGAGAGTAATGGTACTTGGAGATTCCCAGGAATTGGAGCATTTCAGTGCTATGATAAGTATATGGTCTCTAACCTTAAAGCCGTAGCTGAAGCTGCTGGCAAGAAAGAATGGGGTAATGGGGGCCCAAGTGACGCAGGCCACTACAATAACTGGCCTGAGGACACACCATTCTTCAGAAGAGATGGTGGCTGGAATACTCCTTATGGTGAGTTTTTCCTTAAGTGGTATTCAGGTATGCTTCTTGATCATGGAGAGAGAATCCTAACAGCAGCTGAAGCCATTTTTCGTGGCACCGGTGTCAAGCTTTCTGGCAAAGTGGCTGGAATACATTGGCATTATGGAACCAGATCCCATGCTCCTGAGCTCACTGCTGGGTATTATAATACCCGATTCAGGGATGGGTATCGGCCAATAGCTTCCATGTTTGCGAGACATGGGGTGATTTTCAATTTTACTTGCATTGAAATGAAGGATTGGGAACAGCCAGGAGATGCGCAATGCTCCCCAGAGAAACTGATTAAACAAGTCATTCTTGCAACACGGAAAGCTGGGTCCCCCCTTGCTGGGGAGAATGCTCTTCCAAGATTTGACGAAGGTGCATACGATCAGATCGTTAGGAATGCCAATCTCCGACTAGCAGAAGATGGTCATAACACCATAGTGGAACCCATGTGTGCATTCACTTATTTGAGAATGAACCAGCATTTGTTCCAGCCTGAAAATTGGAGATTGTTTGTCTCATTTGTAAGAAAAATGGCACAAGGAGGGGTCTCACATTCATGGGAGCAAGAACACGGAGATACAGACTCATTTGTCTATGCCACGGTCCCATTGGTCCAAGAGGCTGCTGCACTCTTGCATAATTAA___GCAAGCCTAAAGCTTAACTTTTTTGAAGCAGGCAAAATCTGAATGTAAAACATATTTATTGTTAGAATTAAAGTAATGCGTGATTTCACCT

Fln Alignment:

Contig20414___IQEIQVGMGPAGELRYPSYPESNGTWRFPGIGAFQCYDKYMVSNLKAVAEAAGKKEWGNGGPSDAGHYNNWPEDTPFFRRDGGWNTPYGEFFLKWYSGMLLDHGERILTAAEAIFRGTGVKLSGKVAGIHWHYGTRSHAPELTAGYYNTRFRDGYRPIASMFARHGVIFNFTCIEMKDWEQPGDAQCSPEKLIKQVILATRKAGSPLAGENALPRFDEGAYDQIVRNANLRLAEDGHNTIVEPMCAFTYLRMNQHLFQPENWRLFVSFVRKMA-QGGVSHSWEQEHGDTDSFVYATVPLVQEAAA
A9NVE4_______________VVEIQVGMGPAGELRYPSYPESNGTWKFPGIGAFQCYDKYMLANLKATAETAGKKEWGCGGPTNAGYYNNWSEETEFFCSEGGWNSPYGEFFLQWYSNMLLNHGERILAEAESIFHKSGARLSGKVAGIHWHYLTRSHAPELTAGYYNTGDRDGYLPIAQMFGRHGVVFIFTCIEMKDVEQPADAKCSPEKLIKQVIKATRKARIHLAGENALPRFDEAAYTQVLNNSCLRLEQDNPDDKIEPMCAFTYLRMSQHLFQSKNWSTFVSFVRRMSQQNAVSISRDEKQ-------RGIRPLIQEATS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
843			85	14	0.993533
844		14		85	0.993533
860		42	57		1.0
959		88	11		0.999952
1005	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain