SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20368

Length: 962 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene20368

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calcium dependent protein kinase 22 n=2 Tax=Populus trichocarpa RepID=B9GX38_POPTR	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Sma3	Calcium-dependent protein kinase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	0.0	-
Sma3	Calcium/calmodulin-dependent protein kinase.	EC:2.7.11.17	-	3.361e-19	-

Source	Gene names
Sma3	6J23.10; AK1; At1g35670; At1g50700; At1g61950; At1g76040; At2g17290; At2g38910; At3g10660; At3g20410; At4g04695; At4g04710; At4g04720; At4g04740; At4g09570; At4g21940; At4g23650; At4g35310; At4g38230; At5g04870; At5g12180; At5g19360; At5g23580; B0103C08-B

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	peroxisomal membrane	GO:0005778	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	positive regulation of abscisic acid mediated signaling pathway	GO:0009789	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-
Sma3	regulation of anion channel activity	GO:0010359	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G23650.1	CDPK6, CPK3 calcium-dependent protein kinase 6 chr4:12324967-12327415 REVERSE LENGTH=529	69%
RefSeq	Arabidopsis thaliana	NP_194096.1	calcium-dependent protein kinase 6 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002298000.1	calcium dependent protein kinase 3 [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ38

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 19 aas, your sequence is shorter than subject: 300 - 529

Fln protein: CDIVGSAYYVAPEILRRHYGQEVDIWSAGVILYILLCGFPPFWAETERGIFDAILRGRLDMEKAPWPSISNGAKELIKSMLEQDPNKRLKASQVLEHPWMREDGNAPDIALDNAVLVRMKQFQAMNKLKKVALKVIADNLSEEEIMGLKEMFKSMDTDNSGTITFEELKSGFARLGSKLSETEARQLMDATDVDRNGTLDYQEFITATMHMNRTDKQDRLYTAFKYFDKDNSGYITKEEIEQVLKNYGMGDQKTIKEIIDEVDIDNDGRIDYEEFVAMMNKGNPDDKRPEVTVGAPRRG*

Protein Length: 301

Fln nts: AATGTGACATCGTGGGCAGTGCATATTATGTGGCTCCAGAAATATTGCGGCGACACTATGGACAGGAAGTAGATATATGGAGTGCTGGAGTCATACTCTATATTCTTCTCTGTGGTTTCCCTCCATTTTGGGCAGAGACGGAACGAGGTATATTTGATGCTATATTGCGTGGACGCCTCGACATGGAAAAAGCACCATGGCCATCGATTTCTAATGGAGCAAAAGAATTGATTAAATCGATGCTTGAGCAGGATCCCAATAAACGTCTGAAGGCTTCTCAAGTATTAGAACATCCCTGGATGAGAGAAGATGGCAACGCCCCGGACATAGCGCTTGACAATGCTGTATTGGTTAGGATGAAGCAGTTCCAAGCAATGAACAAGCTGAAAAAAGTTGCCTTGAAGGTGATTGCTGACAATCTATCAGAAGAGGAAATAATGGGTTTGAAAGAGATGTTCAAGAGTATGGACACTGATAACAGTGGCACAATCACATTTGAAGAGTTGAAGAGTGGCTTTGCAAGATTAGGGTCTAAACTGTCTGAGACAGAAGCCAGGCAACTGATGGATGCTACAGATGTAGATAGGAATGGGACACTTGATTACCAAGAATTTATCACTGCCACAATGCACATGAACAGAACGGACAAGCAAGATCGTTTGTACACTGCCTTTAAGTATTTTGATAAGGACAACAGCGGGTACATTACAAAGGAGGAAATAGAACAGGTACTGAAAAACTATGGAATGGGTGATCAGAAGACCATTAAGGAGATAATTGACGAGGTGGACATAGATAATGATGGACGAATTGACTACGAGGAGTTTGTGGCAATGATGAACAAGGGCAACCCAGATGATAAAAGACCTGAAGTAACTGTGGGGGCTCCCAGACGTGGATAG___TGCTAGGGACATTATGTATTTTCGGAGCAATCAAGACTTATGTGATCCTTGCTCTACATT

Fln Alignment:

Contig20368___DIVGSAYYVAPEILRRHYGQEVDIWSAGVILYILLCGFPPFWAETERGIFDAILRGRLDMEKAPWPSISNGAKELIKSMLEQDPNKRLKASQVLEHPWMREDGNAPDIALDNAVLVRMKQFQAMNKLKKVALKVIADNLSEEEIMGLKEMFKSMDTDNSGTITFEELKSGFARLGSKLSETEARQLMDATDVDRNGTLDYQEFITATMHMNRTDKQDRLYTAFKYFDKDNSGYITKEEIEQVL-KNYGMGDQKTIKEIIDEVDIDNDGRIDYEEFVAMMNKG
C0PQ38_______________EIVGSPYYMAPEVLKRNYGPEIDVWSAGVILYILLCGVPPFWAESEQGVAQAILRGFVDFKREPWPKISETAKSLVRQMLEPDPKRRLTAQQVIEHPWLQNAKKAPNVPLGDVVKTRLKQFSMTNKFKKRALRVIADHLSVEETKGIKDMFKMMDTDNSGSISYDKLKAGLHKLGSQMDESEVQILMDAADADGNGMLDYREFVAASLHMQSIDNDDYLRKAFLFFDKDGSGYIEIEEFREALADDFGPNDIDVVNSIFNEVDADKDGRISYEEFASMMKTG

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
641			90	10	0.90298
642	90		10		0.90298
643	90		10		0.90298
644		90	10		0.90298
942			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain