SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20354

Length: 1867 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene20354

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NAC protein 1 [Elaeis guineensis] gb\|ABB72844.1\| NAC protein 1 splice variant 2 [Elaeis guineensis]	-	-	0.0	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	NAC domain protein, IPR003441	-	-	3.1277e-42	-

Source	Gene names
Sma3	ANAC; ATAF; ATAF1; At1g01720; At1g26870; At1g52880; At1g52890; At1g61110; At1g61110/F11P17_16; At1g69490; At1g77450; At1g77450/T5M16_4; At3g04070; At3g15500; At3g15510; At4g27410; At5g08790; At5g08790/T2K12_140; At5g08980; At5g63790; AtNAC2; B1065E10.51;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	regulation of cell size	GO:0008361	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to sucrose stimulus	GO:0009744	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	-
Sma3	multidimensional cell growth	GO:0009825	Biological Process	-
Sma3	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	leaf senescence	GO:0010150	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	positive regulation of asymmetric cell division	GO:0045770	Biological Process	-
Sma3	somatic stem cell division	GO:0048103	Biological Process	-
Sma3	root cap development	GO:0048829	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G01720.1	ATAF1, ANAC002 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein chr1:268471-269514 FORWARD LENGTH=289	82%
RefSeq	Arabidopsis thaliana	NP_171677.1	NAC domain-containing protein 2 [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002300972.1	NAC domain protein, IPR003441 [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZG8

Fln msg:

Fln protein: MGMSRRNAEADLQLPPGFRFFPTDEELVVHYLCKKAASQMIPVPIIAEVDLYKYDPWQLPEKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPITAKGGKKRVGIKKALVFYAGKAPKGTKTNWIMHEYRLADVSRPARKKGSLRLDDWVLCRIYNKKISAEKLAQGQKESSYDVVPMEAIDEKDMDNQPSSTSIEHSGIEQSNPSSDRLMKLEPSPTSHNVVPPRSYPMNSNFNLQNPDFFQNTSNPFNASTLKAPVQNTAFNPISPSIDHQWANYNSADLISGLHTDSSSSKPSSSSDPISEKEEVQSSFRLENFLQEQPQSTYNFSMEGLQNPFPQLDQITFFDFNQDYFTGLTTSDYLPRFNSNDIQFQ*

Protein Length: 385

Fln nts: ATGGGGAGATTCATCGGACTCAGCAAACAGAGATAGTCCAAAGGTAAGTGGTTCCACGAAGCAGACATTGCTTGCGTGACAAGTCAGAGTGAAATATCTCTATAAAACACAAGGCAGAGGATAAGCATGGGGAAAGAAATTGCATTTGAGAAGCAGGTCAGAGCATCAAGCGTATTAAAAGAAATTGCAGTAGCAGAGAAAAGTCATAGCATCAAAAGAAATAGCACTAGCAGAAGCAGGTCAGAGCATCAGGAGTATTGAGAAGGAAACACTAGGATAAACATAGCC_-_ATGGGTATGAGTAGAAGAAATGCAGAGGCTGACTTACAGTTGCCTCCTGGATTCAGATTCTTTCCTACAGATGAAGAGCTGGTTGTGCATTACTTGTGCAAGAAGGCAGCCTCTCAGATGATCCCTGTTCCTATAATAGCAGAAGTGGATCTCTACAAATATGATCCATGGCAGCTTCCAGAGAAGGCCCTGTTTGGAGAGAAGGAATGGTATTTTTTCACTCCCAGGGATAGAAAGTACCCAAATGGATCAAGGCCCAATAGGGCTGCTGGTTCTGGATACTGGAAAGCTACAGGTGCTGATAAGCCCATAACTGCTAAAGGTGGAAAGAAGCGAGTGGGCATCAAGAAGGCTCTTGTCTTCTATGCTGGGAAAGCACCCAAAGGCACAAAGACGAATTGGATCATGCACGAATACCGTCTTGCTGATGTTAGCAGACCTGCAAGGAAGAAAGGCAGCTTAAGATTGGATGATTGGGTTCTCTGTCGAATATACAACAAAAAGATCAGTGCTGAGAAGTTAGCACAAGGGCAGAAGGAAAGCTCCTATGATGTTGTACCAATGGAAGCCATCGATGAAAAGGATATGGATAATCAACCCTCCTCAACTTCAATTGAGCACAGTGGAATTGAACAGAGCAACCCATCTTCTGACCGTCTGATGAAATTGGAACCTTCTCCAACAAGCCACAACGTGGTTCCCCCTCGTTCTTATCCCATGAATTCCAATTTCAATTTGCAGAACCCGGATTTCTTCCAAAATACATCAAACCCTTTCAATGCCAGTACCCTCAAGGCTCCAGTACAGAATACAGCATTCAATCCAATTTCCCCCTCCATCGACCACCAATGGGCAAATTACAATTCAGCGGATTTAATTTCAGGACTGCATACTGATTCTAGCAGTTCCAAGCCATCATCATCTTCAGATCCCATTTCGGAGAAAGAAGAAGTTCAGAGTAGCTTCAGACTGGAGAATTTCTTGCAGGAGCAGCCACAATCAACGTATAATTTCAGTATGGAAGGTCTACAAAATCCCTTCCCTCAGTTAGACCAAATAACTTTTTTTGATTTTAATCAAGATTACTTTACTGGCTTAACCACTTCAGACTACCTACCAAGGTTCAACTCAAATGACATACAATTCCAATGA___GTTCATGGTCTTAGAGCAAGGCTTGTCGGTCCCTGGTTAAATATTTTTTTATAAGAGTCTGCCTGTACAGCTTATCCGGCTATAGTTATTTTCAAACCATATGCTGAATCTCTCGTTTTAGCTTCAAAATCATGTACAGCTTGATTCTTTGGAGACAACCTTTGACATCAAACAGGATTGGATGCCACAGATATTCAGTCTATCTTAGGTCCCATGCTATTTTTAGCAAAAGGCCCACCTCTTTCTTAATCAGAAGTTCCACTCTTTCTGTCCGAACTACTTTTCGAATGGTTGTAACAATATAATATTTTTAATGTAATATAAGGCTGGAATTGAAGGAAAGGAAAGTTTAAGGACAGGAGCTTGCCATGTACTTTAGCATCTTTGTTGAATGAAAGGAAATTCAATCAGTTTGTCCCACTTTGCT

Fln Alignment:

Contig20354___MSRRNAEADLQLPPGFRFFPTDEELVVHYLCKKAASQMIPVPIIAEVDLYKYDPWQLPEKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPITAKGGKKRVGIKKALVFYAGKAPKGTKTNWIMHEYRLADVSRPARKKGSLRLDDWVLCRIYNKKISAEKLAQGQKE-SSYDVVPM--EAIDEKDMDNQPSSTSIEHSGIEQSNPSSDRLMKLEPSP---TSHNVVPPRSYPMNSNFNLQNPDFFQNTSNPFNASTLKAPVQNTAFNPISPSIDHQWANYNSADLISGLHTXXXXXXXXXXXXXXXXXXEVQSSFRLENFLQEQPQST-------YNFSMEGLQNPFPQLDQI---TFFDFNQDYFTGLTTSDYLPR
A9NZG8_______________MGRPNAEAQLNLPPGFRFFPTDDELVVHYLCRKAASQAIAVPIIAEVDLYKFDPWQLPEKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPITAKGSNKRVGIKKALVFYVGKAPKGNKTNWIMHEYRLADVNRSAKKKGSLRLDDWVLCRIYNKKSSAEKLAKEQKEWSSEEAMEQFHEEIDEKVPGILPTGNTIMNSSIEHSERTSQDSTISAPSPNCRTASNHDSRASAITSLSYN-SNPIFEQNL-NLSNARS--APMEIPELVPFFSSMNNHRTNYDSADLIPPILLTDSSCSMQSSHDLKSEKEEVQSSFRLEELMQQQQQENAGLNQQMFSFGFESLQNPFPSLDQIQPPTNNDPFQDYLASLTVPSYLQR

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
590			80	20	0.995493
610	14	85			0.993533
612	85		14		0.993533
613	85		14		0.993533
614	85		14		0.993533
661		87	12		0.992554
662			12	87	0.992554
1407		85	14		0.999981
1599	9		90		0.999872
1614	22	77			1.0
1655		42		57	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain