SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20347

Length: 1615 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene20347

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent Clp protease proteolytic subunit n=2 Tax=Picea sitchensis RepID=C0PPS8_PICSI	-	-	0.0	66%
FL-Next	sp=ATP-dependent Clp protease proteolytic subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	ATP-dependent Clp protease proteolytic subunit	-	-	3.955e-23	-

Source	Gene names
Sma3	At1g09130; CLPR3; F7G19.1; GSVIVT00010014001; GSVIVT00022709001; LOC_Os03g22430; NCLPP8; Os03g0344900; OsI_11536; OsJ_10812; PHYPADRAFT_121697; PHYPADRAFT_129268; POPTRDRAFT_1096171; POPTRDRAFT_581876; RCOM_1433290; VITISV_042913;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S14, ClpP	IPR001907	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G09130.3	-	47%
RefSeq	Arabidopsis thaliana	NP_001031008.1	ATP-dependent Clp protease proteolytic subunit-related protein 3 [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002319519.1	predicted protein [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPS8

Fln msg: your sequence is longer than subject: 368 - 327

Fln protein: MGMHTLITNRPNLHIHQLKPQPWGLRVAKPTETMECCTTRRSPLVSSFVCPSPKWTSRRTTRPRDRVSMALPFPPRMPNDPFLSKQAFTASAPQTKPHSDDTPPLLDLMADITPRLMAGPAQVERASYNEHRPRRPPPDLPSLLLNSRIVFIGMPLVPAVTELVIAEFLYLQWLDPSKPTYVYINSTGTSREDGETVALETEGFAIMIQ*CR*KMRSTQWHLEQLLARLACCWLQERRGSGLCCLMLKLCFNSHVYHQLGKCQQLMFTLELRRLVLFL*QLIHNRDTFVKLLALHTGNSFETVAKAMERPLYMFPREAVKFGVADKILWEGQEAIGDTLSPEEWDKRAGIKLVERPVSYGAGSGGLG*

Protein Length: 369

Fln nts: TAC_-_ATGGGGATGCACACATTAATCACTAACCGACCAAATCTTCATATACACCAACTAAAACCCCAGCCATGGGGACTCAGAGTAGCCAAACCCACTGAAACGATGGAGTGCTGCACCACCAGGCGCTCTCCTCTGGTTTCTTCTTTCGTGTGCCCATCTCCTAAATGGACGTCCAGAAGGACAACAAGGCCTAGGGATCGAGTCTCGATGGCACTACCGTTCCCTCCGCGCATGCCCAATGATCCTTTCCTCTCCAAACAAGCATTCACAGCCTCCGCTCCTCAAACAAAACCCCACTCGGACGACACGCCTCCGCTCCTCGACCTGATGGCCGATATTACGCCCAGGCTAATGGCAGGACCAGCTCAGGTTGAACGTGCGTCTTACAACGAGCACAGGCCCAGAAGGCCTCCGCCAGACCTGCCTTCATTGCTTCTCAACAGTCGAATTGTCTTCATAGGCATGCCTTTGGTTCCAGCTGTCACAGAGCTTGTTATAGCGGAGTTTCTTTATTTGCAATGGTTGGATCCAAGTAAGCCGACTTATGTGTACATCAACTCAACTGGAACATCACGTGAGGATGGCGAGACGGTTGCCTTGGAAACTGAAGGTTTTGCCATTATGATACAATGATGCAGATGAAAAATGAGATCCACACAGTGGCATTTGGAGCAGCTGTTGGCCAGGCTTGCTTGCTGTTGGCTGCAGGAAAGAAGGGGAAGCGGTTTATGTTGCCTCATGCTCAAGTTATGCTTCAACAGCCACGTTTACCACCAACTGGGCAAATGCCAGCAATTGATGTTCACATTAGAGCTAAGGAGGTTAGTACTATTCTTGTGACAGCTTATACATAACAGAGATACATTTGTAAAGCTTCTTGCTCTGCACACTGGAAATTCGTTTGAGACAGTTGCAAAGGCTATGGAGAGACCCTTGTACATGTTTCCCAGGGAAGCTGTGAAATTTGGAGTGGCCGACAAGATTCTATGGGAAGGCCAGGAAGCTATAGGAGATACCCTTTCACCAGAGGAGTGGGACAAGAGAGCCGGCATTAAACTTGTCGAACGGCCTGTGAGTTATGGTGCAGGAAGTGGTGGTTTGGGTTGA___TTTTTGTGTGCAGTCGGTTGTAACATGTTGCAGTATATCAATATGTATGTCCCCAAGATTAGCTCAAGGCTTCGAGACTCTTATGCAGTTATTACACATGCCGTGAGGAAATTGTATTGCATATAAAGCTGAAATTGGTGACCCATCAGTTAGTTGTAATGGAATTTTTATAAGTTACATATATTTGGCTGGTCATCGCTTGGAAGTTTTAGTGCCAATAACGATTTATCTGCTATTTTATATTGTTTTCTTGATAAGCATTGGACTGTTACGTTGGATCAACGGTTTGTGAAGCATTAATTACGAGGTACAATGTGCCGTCTCGTTTTATAGTTTGAAGCCTCTGAAGGCTTTGAGCCGTGTTTCAACTATATGCCCTAGTTTGAAGTCTTTCAATGTTACTTGTTTCGATGGTAGTCCTTCAAATTCTTTGACTGAATTTCCACATGTTAATACAATTTACATGGTTTATTTCAGATTAATTCATCTAGATGTATATTGTCTTACT

Fln Alignment:

Contig20347___MECCTTRRSPLVSSFVCPSPKWTSRRTTRPRDRVSMALPFPPRMPNDPFLSKQAFTASAPQTKPHSDDTPPLLDLMADITPRLMAGPAQVERASYNEHXXXXXXXXXXXXXXXXXIVFIGMPLVPAVTELVIAEFLYLQWLDPSKPTYVYINSTGTSREDGETVALETEGFAIMIQ*CR*KMRSTQWHLEQLLARLACCWLQERRGSGLCCLMLKLCFNSHVY---HQLGKCQQ--LMFTLELRRLVLFL--*QLIHNRDTFVKLLALHTGNSFETVAKAMERPLYMFPREAVKFGVADKILWEGQEAIGDTLSPEEWDKRAGIKLVERPVSYGAGSGGLG
C0PPS8_______________MECCSTRRSPLVSSFVCPSPKWTPRMITRSRDRVSMAIPLPPRNPNDPFLSNLAFTASGSQAKPRSDDTPPLLDLVANITPRLMAGPAQVERASYNEHRPRRPPPDLPSLLLNSRIIFIGMPLVPAVTELVIAEFLYLQWLDPRQPTYVYINSTGTSREDGETVALETEGFAIY---------DTMMQMKNEIHTVAF-----GAAVGQACLLLAAGKKGKRYMLPHAQVLLQQPRLPATGQMPAIDVHIRAKELIHNRDTFVKLLAKHTGNPFETVAKAMERPFYMFPRQAVEFGVADKILWQGQEAIGDTPSPDEWDKRAGIKLVERPVAYGAGSGGLG

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
328	83		16		0.994512
580	16		83		0.994512
582	16			83	0.994512
842	33		66		0.997452
845		66	33		0.997452
902			25	75	0.996473
903		75		25	0.996473
907		25		75	0.996473
912		75		25	0.996473
913	75			25	0.996473
918			75	25	0.996473
948	20			80	0.995493
949	20			80	0.995493
951		80	20		0.995493
952		80		20	0.995493
999			80	20	0.995493
1001		80		20	0.995493
1168	80			20	0.995493
1169			80	20	0.995493
1170	80	20			0.995493
1171			20	80	0.995493
1172		20		80	0.995493
1177		80	20		0.995493
1179	80			20	0.995493
1181	20		80		0.995493
1183	20			80	0.995493
1184			20	80	0.995493
1186		20	80		0.995493
1188	20		80		0.995493
1189	80		20		0.995493
1190		80	20		0.995493
1193		20		80	0.995493
1194			20	80	0.995493
1196		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain