SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20334

Length: 1801 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene20334

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic translation initiation factor 2 subunit 1 [Arabidopsis thaliana] gb\|AAL86344.1\| putative eukaryotic translation initiation factor 2 alpha subunit eIF2 [Arabidopsis thaliana] gb\|AAD25664.2\| putative eukaryotic translation initiation factor 2 alp	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	eukaryotic translation initiation factor 2 complex	GO:0005850	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Translation initiation factor 2, alpha subunit	IPR011488	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Ribosomal protein S1, RNA-binding domain	IPR003029	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G40290.1	Eukaryotic translation initiation factor 2 subunit 1 chr2:16829030-16830889 REVERSE LENGTH=344	80%
RefSeq	Arabidopsis thaliana	NP_565927.1	Eukaryotic translation initiation factor 2 subunit 1 [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002312178.1	predicted protein [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN70

Fln msg:

Fln protein: MATTPLNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRQEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETMQLDLEDLYIHVGWPLYRKYGHAFEAFKVIVTDPDSVLTLLTREVKEIGPDGQEVTKVVPAMSEEVKEALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKEAMRKAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGISVLDLAIKACTKEIEKHKGKLMVKEAPRAVSERDDKLLAEHMAKLNSQNQEVDGDVDSEDEEDTGMGEVDVDGPSALAE*

Protein Length: 345

Fln nts: ATGTCAGTCTGATGACGAAACCTTGAAATCAGACTGACATTTTTCATAAGCCAAGTTTTAGCGAAACGAAAAATCGGGAACCAACTGACATTTTTCATAAGCCGAGTTTTAGCGAAACGAAAAATCGTGAACCAACGAGCGCTCGGTTCATGTCAAGTGACAGAAAATAACCCTGAAATCCAATGCGAACAAAACTTATCCCAAAACCCTTACGAAATTTTTGCTTTGTCCGAGAGCCAAACTAGACTAGGGTATTCGGGCTTCGACGCCGGAAATCCAGCTCGCAGTTCAATTTCAGATCGGCTCGCGAACATCAATAAACACCTAATTCGTCATTCCGTTCAAGAAGAGCTTGAACCGAGGCTAGCTTCGACGACCTATTTTTTCTCA_-_ATGGCGACCACGCCGCTGAATCTAGAATGCAGAATGTATGAAGCAAGATACCCGGAAGTGGACATGGCCGTCATGATTCAGGTCAAGAACATCGCAGACATGGGGGCCTACGTTTCCCTTCTGGAGTATAACAACATTGAGGGCATGATTTTGTTCTCCGAGCTCTCTCGTCGGCGTATTCGTAGTGTTAGCAGTCTCATTAAGGTCGGCCGACAGGAGCCTGTGATGGTTCTGAGGGTCGACAAAGAGAAGGGTTATATCGACCTGAGCAAGCGTAGGGTTTCAGAGGAAGATATTCAGGCCTGCGAGGAGAGGTATAATAAGAGCAAGCTGGTGCACTCGATCATGCGACACGTGGCCGAGACCATGCAGCTAGACCTAGAGGATCTATACATCCATGTTGGTTGGCCTTTGTACCGAAAATATGGACATGCTTTTGAGGCATTTAAGGTGATAGTTACAGATCCAGATTCGGTCTTGACTTTGCTAACCAGGGAAGTCAAAGAGATAGGCCCTGATGGACAAGAGGTGACAAAAGTGGTACCAGCTATGTCAGAGGAGGTTAAAGAAGCATTAGTAAAAAATATTAGAAGGCGAATGACACCACAACCTTTGAAAATCCGAGCAGACATTGAGATGAAGTGTTTTCAATTTGATGGTGTGCTTCACATCAAGGAGGCAATGAGAAAGGCTGAAGCTGCTGGTAATGATGATTGCCCAGTCAAGATCAAATTGGTTGCTCCACCTCTCTATGTGCTTACTACTCAAACTCTTGACAAGGAGCAAGGCATATCTGTACTAGATTTGGCTATCAAAGCATGTACAAAAGAAATTGAGAAGCACAAGGGCAAATTAATGGTTAAGGAAGCTCCTCGGGCGGTGAGTGAAAGAGATGACAAACTTCTTGCAGAGCACATGGCAAAACTTAATTCTCAGAACCAGGAGGTGGATGGAGATGTTGATAGTGAAGATGAGGAGGATACTGGAATGGGTGAGGTTGATGTGGATGGTCCAAGTGCATTAGCTGAGTAG___TAAAATGATGGTTATATGATTCTGATATTTATACCTAATGTGTGCAAGCCATGGTTTTGGTTTTACCATGTGCTGCCTAACAGATTACCATTTGTTAACCTGTGTATACGGGATTTTTGTAGTTATGAAATCAGTTTTATATTGGTGGAATATTTGTCTGAGAGAGCGAAAGCAGCACCGTTAGCTTGTGCAGAGCTATTAGGAATTGTAAGAGGGTCCTATTTCCACATCTTGGCAGATTTGCCAAAAGTAGTCGTTTTATTTTACCAGTCAAGATGGTTCTAAATGCTGAATTTTCATAAAATCTGTTATTATTATTATTATAATCATTCGCCCTTTTATCTAGTCTCTAATTATAGGAGGCTATCTATCCAAAAAA

Fln Alignment:

Contig20334___MATTPLNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRQEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETMQLDLEDLYIHVGWPLYRKYGHAFEAFKVIVTDPDSVLTLLTREVKEIGPDGQEVTKVVPAMSEEVKEALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKEAMRKAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGISVLDLAIKACTKEIEKHKGKLMVKEAPRAVSERDDKLLAEHMAKLNSQNQXXXXXXXXXXXXXTGMGEVDVDGPSALAE
A9NN70_______________MATTTPNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRQEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETMQQDLEDLYIHVGWPLYRKYGHAFEAFKVIVTDPDSVLNLLTREIKETGPDSQEVTKVVPAMSDEVKEALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMRKAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGISVLDLAIKACTKEIEKHKGKLMVKEAPRAVSERDDKLLAEHMAKLQSQNQEVDGDVDSEDEEDTGMGEVDVDAPSGLAE

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1363		38		61	1.0
1483	2		92		0.992495
1750		23		76	1.0
1753	10			90	0.90298
1767		14		85	0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
1731	1746	TTA TTA TTA TTA TTA T	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain