SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20312

Length: 946 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene20312

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin [Antirrhinum majus]	-	-	0.0	99%
FL-Next	tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	99%
Sma3	Bi-ubiquitin	-	-	1.79e-08	-

Source	Gene names
Sma3	AT5G03240; At1g55060; At2g36170; At3g09790; At4g02890; At4g05050; At4g05320; At5g03240; At5g20620; At5g37640; B1472F02.6; CHLREDRAFT_130075; CHLREDRAFT_140045; CHLREDRAFT_196873; EgUbi; F11F8_38; F8A24.16; FUBI1; GSVIVT00035709001; GUbB1; GUbB2; H0303G06.

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G05050.1	UBQ11 ubiquitin 11 chr4:2588271-2588960 REVERSE LENGTH=229	99%
RefSeq	Arabidopsis thaliana	NP_001031585.1	ubiquitin 11 [Arabidopsis thaliana]	99%
RefSeq	Populus trichocarpa	XP_002305607.1	predicted protein [Populus trichocarpa]	99%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q7FPA4

Fln msg: W1: There is no M at the beginning,

Fln protein: FSQRDCCDHFVYYLQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGY*

Protein Length: 244

Fln nts: TTTTTTTCAGTTTTGGCTAATTCTCTCAACGCGACTGCTGTGATCATTTCGTTTATTATCTTCAGATATTTGTGAAGACCTTGACCGGTAAGACCATAACCCTTGAGGTAGAGAGCTCTGATACCATTGACAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGACCAGCAGCGTCTCATCTTTGCCGGTAAGCAGTTGGAAGATGGGCGCACTCTCGCCGACTACAACATCCAGAAGGAATCCACTCTTCACCTTGTCCTCCGTCTTAGAGGTGGGATGCAGATCTTTGTCAAAACCCTGACCGGGAAGACAATTACCCTGGAAGTTGAGAGTTCTGACACAATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATTCCACCGGACCAGCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGGAGGACTCTGGCCGACTATAACATTCAGAAGGAGTCAACGCTGCATCTTGTCCTTCGGCTCCGTGGTGGTATGCAGATATTTGTGAAGACGTTGACAGGCAAGACGATCACACTGGAGGTTGAGAGTTCCGATACTATTGATAATGTAAAAGCGAAAATTCAGGACAAGGAAGGGATTCCTCCCGATCAGCAGAGGCTCATATTTGCTGGTAAACAGCTGGAGGATGGGCGAACTCTGGCCGATTATAACATCCAGAAGGAGTCTACACTTCACCTTGTCTTGCGTCTGCGTGGTGGGTATTGA___AATTCTCAACAGTCTTGCGTCTGCGTGGTGGGTGTTGAAATTCTCAACATCTATTTTCATGAATAGGGTCAAAATGCGCATTTCATTGAATTCTTAACTTAGCTAGCAGTTAGATGCCGCAATGCCGCGGCAGCGTCTATATAGGTTTTAGATGTTATCTTTAGATGTCGTGCATAATGAAGAAGACGACTTTCAAT

Fln Alignment:

Contig20312___LQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGY
Q7FPA4_______________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
290		12		87	0.992554
696		37		62	1.0
743			75	25	0.996473
746	50		50		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain