SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20289

Length: 1912 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene20289

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Metallophos multi-domain protein	-	-	4.0e-21	19%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Sma3	Phytase	-	-	2.877e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	Acid phosphatase.	EC:3.1.3.2	-	1.308e-24	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminobenzoate degradation	00627		1.308e-24	%
Sma3	Riboflavin metabolism	00740		1.308e-24	%

Source	Gene names
Sma3	AT1; AT2; AT3; AT4; At2g32770; At3g07130; At3g20500; At3g52780; At4g13700; CHLREDRAFT_120391; F18A5.90; F24L7.9; F3C22.180; GSVIVT00010413001; GSVIVT00010414001; GSVIVT00011763001; GSVIVT00020463001; GSVIVT00021634001; GSVIVT00027342001; GSVIVT00031672001

Source	GOs	Term	Type	Identity
Sma3	acid phosphatase activity	GO:0003993	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Orn/Lys/Arg decarboxylase, major domain	IPR000310	-	-
Sma3	Fibronectin, type III	IPR003961	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Orn/Lys/Arg decarboxylase, C-terminal	IPR008286	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Purple acid phosphatase, N-terminal	IPR015914	-	-
Sma3	Ribosomal protein L30, conserved site	IPR018038	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G07130.1	ATPAP15, PAP15 purple acid phosphatase 15 chr3:2255763-2257981 REVERSE LENGTH=532	60%
RefSeq	Arabidopsis thaliana	NP_187369.1	purple acid phosphatase 15 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002303814.1	predicted protein, partial [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA01

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is longer than subject: 534 - 423

Fln protein: MGWLRLLFLWIGCLHCISQKVCSAPIPSTLDGPFTPVTVSLDPNLRLGSDDLPPYHPRLVKRVPSVFPEQIKLALSTPDAMWVSWITGDAQIGPKVVPLDPSSVGSEVFYGTQTGNYTFTSKGKSLVYSQIYPYAGLLNYTSGIIHRVRLTGLLPNTKYYYRCGDQTLSSISEEHEFVTPPSPGPNSYLTRIAVIGDLGLTYNSSSTYDHLVENDPSMILMVGDLVYANNYRTTGDKGVPCYECDFPDTPIRETYQPRWDAWGRFMEPLLSRIPMMVLGGNHDIEPQVGDLTFASYSARFAVPSEESGSNNSLYYSFNVGGVHFLMLAAYIDFNRSSEQYAWLKQDLENVNRELTPWLIASWHPPWYNSYTNHYQEFECMRQQMEDILYEYGVDLVFNGHVHAYERMNRVYNYVLNPCGPVYITVGDGGNIEKLATRHADEPGNCTKQIHNHDFGGVCPFNYTSGPAKGKLCWDRQPDWSALRESSFGHGILEVKNSTHALWTWHRNQDAYGNVGDEIYIVRQPEICAHMTAYL

Protein Length: 535

Fln nts: CGTCGTGACCTTGGCTGTCACTCACCTTTCTAATTTACGTTTACGTCGCTTTTCTCGTGACCTTGTCTGTCAGTCAATTCTTCTTATTCTCTGTAGTGCTCTCTGCCTACGTGATGCATGAAAACATTTATTGTCATTGTTAGCAGCTGGGCACATATTGTTATCATTTTCTGTTAATGCCCTCTGCCATCCCTGACTCAAAAAAGTGGTATATTGCCATAGTTGGGCACCCGGGCACGACTTCCCGGCATTGTTTGTGACATTCGGTTTCTCCGCCCGAGGGAGAATTCACAATCCGAGCTGCGAAG_-_ATGGGATGGTTACGCCTATTGTTCTTGTGGATTGGGTGCCTTCACTGCATCTCTCAGAAGGTTTGCTCCGCCCCCATTCCTAGCACATTAGACGGGCCATTCACTCCCGTCACGGTGTCGCTCGACCCGAATCTTCGTCTGGGAAGCGATGATCTCCCCCCTTATCATCCTCGTCTCGTCAAACGAGTCCCCTCTGTTTTCCCAGAGCAGATCAAGCTCGCACTCTCCACGCCCGATGCCATGTGGGTTTCCTGGATAACAGGGGACGCTCAAATTGGACCCAAAGTGGTTCCGCTGGATCCTTCGTCTGTGGGGTCCGAGGTTTTTTATGGCACCCAGACTGGTAATTATACCTTCACTTCCAAAGGGAAGTCCCTAGTCTACAGCCAGATATATCCATACGCAGGCCTTCTCAACTACACCTCTGGAATTATTCATCGGGTGCGTCTTACTGGGCTTCTTCCTAACACAAAATACTACTACAGATGTGGAGACCAAACCTTATCTTCCATAAGTGAAGAGCACGAGTTTGTCACACCACCATCTCCAGGCCCAAATAGCTATCTTACTCGAATAGCAGTTATTGGTGATTTGGGCCTCACATACAATTCATCTAGCACATATGATCATCTTGTTGAAAATGATCCCAGCATGATTCTTATGGTTGGAGATCTGGTCTATGCAAACAACTACCGAACCACAGGCGACAAAGGAGTACCATGCTATGAATGTGACTTTCCAGACACTCCTATCAGAGAGACATACCAACCTCGCTGGGATGCATGGGGCAGATTTATGGAGCCATTGTTGTCACGCATACCAATGATGGTTCTAGGAGGAAATCATGATATAGAACCTCAAGTGGGAGACCTCACATTTGCATCATATAGCGCCCGGTTTGCAGTTCCCTCTGAAGAGTCTGGATCCAACAATAGCCTGTATTATTCCTTCAATGTTGGAGGGGTACACTTTCTCATGCTTGCAGCTTATATAGATTTCAATAGATCCAGTGAACAATATGCTTGGCTCAAGCAAGATCTTGAAAATGTAAACCGTGAACTGACTCCTTGGTTGATTGCATCATGGCATCCTCCTTGGTATAATAGTTACACTAACCATTATCAAGAATTTGAGTGTATGAGACAACAGATGGAAGACATCCTATACGAATATGGTGTAGACTTGGTGTTCAATGGCCATGTACATGCATATGAGAGGATGAACAGGGTTTATAACTATGTCCTAAACCCATGTGGTCCAGTGTATATCACAGTGGGAGATGGTGGAAACATTGAGAAACTTGCAACAAGGCATGCAGACGAACCTGGAAATTGTACAAAACAAATACATAACCACGACTTTGGAGGGGTTTGCCCTTTTAATTACACCTCTGGTCCAGCAAAGGGGAAGCTTTGCTGGGACAGACAGCCTGATTGGAGTGCACTTAGAGAATCCAGCTTTGGGCATGGCATATTAGAGGTAAAGAATTCAACTCATGCACTTTGGACATGGCATCGCAATCAGGATGCTTATGGAAATGTGGGTGATGAAATTTATATTGTAAGACAACCTGAAATTTGTGCTCACATGACGGCCTACCTGTG

Fln Alignment:

Contig20289___PEQIKLALSTPDAMWVSWITGDAQIGPKVVPLDPSSVGSEVFYGTQTGNYTFTSKGKSLVYSQIYPYAGLLNYTSGIIHRVRLTGLLPNTKYYYRCGDQTLSSISEEHEFVTPPSPGPNSYLTRIAVIGDLGLTYNSSSTYDHLVENDPSMILMVGDLVYANNYRTTGDKGVPCYECDFPDTPIRETYQPRWDAWGRFMEPLLSRIPMMVLGGNHDIE--PQVGDLTFASYSARFAVPSEESGSNNSLYYSFNVGGVHFLMLAAYIDFNRSSEQYAWLKQDLENVNRELTPWLIASWHPPWYNSYTNHYQEFECMRQQMEDILYEYGVDLVFNGHVHAYERMNRVYNYVLNPCGPVYITVGDGGNIEKLATRHADEPGNCTKQIHNHDFGGVCPFNYTSGPAKGKLCWDRQPDWSALRESSFGHGILEVKNSTHALWTWHRNQDAYGNVGDEIYI
D5AA01_______________PQQVHVSLIGENQMRITWITNDANV-PSVVE-----------YGTSPGVYNFSAKGENTSYTY-------LGYRSGQIHYVTLGPLEANTIYYYRCG-----TYGPEYSVKTPRSEFPITF----AIVGDLGQTGRTNSTLQHIQQANYDVFLLPGDLSYA------------------------DTQQPLWDSFGMLVQPLASTRPWMVTEGDHEIERIPIVITTEFIAYNARWRMPFEESGSSSNLYYSFEVAGVHIVMLGSYAEYKQNSDQYEWLQADLSRVNKTRTPWIIVLFHVPWYNSNAAHQGEGNDMRAAMEPLLYAAKVDIAFAGHVHAYERFSRVYMNTVNPCGAVHITIGDGGNSQGL----------------DSDF------------------LDSQPQWSLFREASFGHGELTIYNATHAHWSWHRNDDDASTMADENWI

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
259			66	33	0.997452
388		75		25	0.996473
547	25	75			1.0
651	12	87			0.992554
654	87			12	0.992554
806	62			37	1.0
863	50		50		1.0
1093	75			25	0.996473
1179	25		75		0.996473
1180		25	75		0.996473
1182			75	25	0.996473
1183	75			25	0.996473
1240		80	20		0.995493
1241		80	20		0.995493
1481		85		14	0.993533
1510	14		85		0.993533
1566		10		90	0.90298
1569		10	90		0.90298
1572	10	90			0.90298
1574	90	10			0.90298
1575			90	10	0.90298
1578			10	90	0.90298
1579	90	10			0.90298
1581	90		10		0.90298
1656	50	50			1.0
1667		62		12	1.0
1669	62		12	25	1.0
1670		87		12	0.992554
1671	25		75		1.0
1674		12		87	0.992554
1681		12	87		0.992554
1682			87	12	0.992554
1685		12		87	0.992554
1686	12			87	0.992554
1687		12	87		0.992554
1688		87		12	0.992554
1690	12	87			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain