SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20232

Length: 892 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene20232

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative kinase-like protein TMKL1 [Arabidopsis thaliana] sp\|P33543.1\|TMKL1_ARATH RecName: Full=Putative kinase-like protein TMKL1; Flags: Precursor emb\|CAA51385.1\| TMKL1 [Arabidopsis thaliana] dbj\|BAB01215.1\| receptor kinase [Arabidopsis thaliana] gb\|AAM	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	Nodulation receptor kinase, putative	-	-	4.321e-09	-

Source	Gene names
Sma3	AT1G68400; AT3G24660; AT3G51740; AT3G56100; Aa1_7620; Aa6_7620; At1g68400; At3g24660; At3g51740; At3g51740/T18N14.120; At3g56100; At3g56100/F18O21_60; At5g07620; Bo_7620; C825ERIPDK; CLL6; Cr_7620; F18O21_60; GSVIVT00001246001; GSVIVT00017879001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G24660.1	TMKL1 transmembrane kinase-like 1 chr3:9003641-9005751 FORWARD LENGTH=674	57%
RefSeq	Arabidopsis thaliana	NP_189109.1	putative kinase-like protein TMKL1 [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002303085.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP80

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 5 aas, your sequence is shorter than subject: 297 - 657

Fln protein: MGTRTKSSANPEAGFWLQEP*VYVIASSLI*YYHHLHVPLVL*PSENRSGMYAFHRFKFHLVQLKCIHSHSMTFEFSPFIYYVHIAGTNRPAPGWARRHKIALGAARGLAYLHTGFHKSIIHGNIKSKNILVDDNYVAHLSDYGLNKLMNSTANIEMLEAAASQGYKAPELIKMKRANAKTDIYSFGIVLLEILTGRRPGRTSSSNHIVDLPTVVKNAVLEERISELFDLELLRAMRSPADEGLLQVLQLAMGCCAPSPSVRPHIKEVVRQLEEIRPKPQSPHLALSPQYNSDDKSS

Protein Length: 298

Fln nts: ATGGGGACGCGCACCAAAAGCTCTGCCAATCCAGAGGCTGGCTTTTGGCTGCAAGAACCTTAGGTTTATGTGATAGCTTCCTCCCTCATTTAGTACTACCATCACTTACATGTGCCTCTCGTTTTGTAGCCTTCTGAAAATCGAAGTGGCATGTATGCATTCCACAGATTTAAATTCCACTTGGTTCAATTGAAATGCATTCATTCTCATTCCATGACATTTGAATTCAGTCCATTCATATATTATGTTCATATTGCAGGTACAAACAGGCCTGCTCCTGGATGGGCTAGGAGACACAAAATTGCTCTGGGAGCTGCTAGAGGTCTTGCCTACCTTCACACTGGATTCCACAAATCCATCATACACGGCAATATCAAGTCAAAAAACATACTTGTGGATGACAATTATGTTGCTCATCTTTCTGACTATGGTCTTAACAAGCTAATGAACTCAACAGCAAATATTGAGATGTTAGAAGCTGCTGCTTCCCAGGGATACAAAGCACCTGAACTTATCAAGATGAAAAGGGCCAATGCAAAGACTGATATATACAGCTTTGGTATTGTTTTACTTGAAATTCTCACAGGCAGAAGACCTGGTAGAACAAGCTCATCCAACCATATTGTTGATTTGCCAACAGTCGTGAAGAATGCAGTGCTTGAAGAGAGGATTTCAGAACTCTTTGACCTTGAGCTTTTGCGTGCAATGAGAAGTCCAGCAGATGAAGGTCTCCTGCAAGTTCTGCAGCTTGCAATGGGTTGTTGTGCTCCTTCTCCATCAGTCAGGCCACATATAAAAGAGGTAGTCCGTCAACTTGAGGAGATTAGGCCAAAACCTCAATCTCCGCATCTTGCCCTTTCCCCACAATACAATTCAGATGACAAGAGTAGTA

Fln Alignment:

Contig20232___GTNRPAPGWARRHKIALGAARGLAYLHTGFHKSIIHGNIKSKNILVDDNYVAHLSDYGLNKLMNSTANIEMLEAAASQGYKAPELIKMKRANAKTDIYSFGIVLLEILTGRRPGR-TSSSNHIVDLPTVVKNAVLEERISELFDLELLRAMRSPADEGLLQVLQLAMGCCAPSPSVRPHIKEVVRQLEEIRPKPQSP
B8LP80_______________GSGRQHLSWARRQKIALGAARGLAHLHTGLETPIIHGNLKSKNVLVDEYYVAHLTDFGLAGLMSPNAAAEMMAAASLQGYKAPELQKMKKANTKTDIYSFGIFLLEILMGKRPGRNASASDEIVDLPSIVKAAVLEERTMQIFDPEILRGIRSPADDGLLHALQLAMGCCAPSPAVRPDIKEVVRQLEELRPKMHSP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
295		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain