SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20217

Length: 496 nt

UniGene Fasta

>sp_v3.0_unigene20217
GGAGAGTTGCGGGAGAGTGGATCGATAATGGATCGTTACGAGTTAGTTAAGGACATCGGGTCTGGTAATTTCGGAGTGGCGAGGCTCGTGCGGGACAAGAAGACACGAGAGCTCGTTGCAGTCAAGTATATCGAGCGAGGCCAAAAGATTGATGAAAATGTGAGGCGGGAGATTATTAATCACAGATCTCTGCGGCATCCCAACATAGTTCGCTTCAAGGAGTCTTCTCTATTGCATTCCCAACCGAAATCAACAGTGGGAACGCCCGCCTACATTGCTCCAGAGGTTCTCTCCAAGAAAGAGTACGATGGCAAGATTGCAGATGTCTGGTCATGTGGGGTGACTTTGTACGTGATGCTGGTCGGCGCTTATCCTTTCGAAGATCCAGAGGATCCCAAAAACTTTAGAAAAACCATTGGGAGAATATTAAGCGCCCAATATTCAATACCGAACTATGTATACATATCTGCAGAATGCAGACACCTGCTGTCAAGGA

Ace file of the UniGene sp_v3.0_unigene20217

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine-protein kinase SAPK1, putative n=1 Tax=Ricinus communis RepID=B9T099_RICCO	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Protein kinase	-	-	3.861e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferases, Transferring phosphorous-containing groups, Phosphotransferases with an alcohol group as acceptor.	EC:2.7.1.-	-	4.887e-06	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pentose phosphate pathway	00030		4.887e-06	%
Sma3	Lipopolysaccharide biosynthesis	00540		4.887e-06	%
Sma3	Nicotinate and nicotinamide metabolism	00760		4.887e-06	%
Sma3	Metabolic pathways	01100		4.887e-06	%
Sma3	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	3.85e-40	-

Source	Gene names
Sma3	41K; AAPK; ASK1; ASK2; AT5G63650; At1g10940; At1g60940; At1g78290; At2g23030; At3g50500; At4g33950; At4g40010; At5g08590; At5g63650; At5g66880; B0308C03.1; B0518A01.2; BSK1; BSK2; CHLREDRAFT_113331; CHLREDRAFT_153921; CHLREDRAFT_185806; F17I5.140; F21P24.

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	orotate phosphoribosyltransferase activity	GO:0004588	Molecular Function	-
Sma3	orotidine-5'-phosphate decarboxylase activity	GO:0004590	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	'de novo' pyrimidine base biosynthetic process	GO:0006207	Biological Process	-
Sma3	pyrimidine nucleotide biosynthetic process	GO:0006221	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to osmotic stress	GO:0006970	Biological Process	-
Sma3	nucleoside metabolic process	GO:0009116	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	positive regulation of abscisic acid mediated signaling pathway	GO:0009789	Biological Process	-
Sma3	regulation of seed germination	GO:0010029	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Phosphoribosyltransferase	IPR000836	-	-
Sma3	Orotidine 5'-phosphate decarboxylase domain	IPR001754	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Orotate phosphoribosyl transferase, clade 1	IPR004467	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Orotidine 5'-phosphate decarboxylase	IPR014732	-	-
Sma3		IPR015740	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Orotidine 5'-phosphate decarboxylase, active site	IPR018089	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G33950.1	OST1, SNRK2-6, SRK2E, SNRK2.6, P44, ATOST1 Protein kinase superfamily protein chr4:16272364-16274657 FORWARD LENGTH=362	84%
RefSeq	Arabidopsis thaliana	NP_001119111.1	serine/threonine-protein kinase SRK2E [Arabidopsis thaliana]	84%
RefSeq	Populus trichocarpa	XP_002329552.1	predicted protein [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKB4

Fln msg: Distance to subject end: 102 aas, atg_distance in limit (1-15): atg_distance = 7, your sequence is shorter than subject: 156 - 356

Fln protein: MDRYELVKDIGSGNFGVARLVRDKKTRELVAVKYIERGQKIDENVRREIINHRSLRHPNIVRFKESSLLHSQPKSTVGTPAYIAPEVLSKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPKNFRKTIGRILSAQYSIPNYVYISAECRHLLSR

Protein Length: 157

Fln nts: GGAGAGTTGCGGGAGAGTGGATCGATA_-_ATGGATCGTTACGAGTTAGTTAAGGACATCGGGTCTGGTAATTTCGGAGTGGCGAGGCTCGTGCGGGACAAGAAGACACGAGAGCTCGTTGCAGTCAAGTATATCGAGCGAGGCCAAAAGATTGATGAAAATGTGAGGCGGGAGATTATTAATCACAGATCTCTGCGGCATCCCAACATAGTTCGCTTCAAGGAGTCTTCTCTATTGCATTCCCAACCGAAATCAACAGTGGGAACGCCCGCCTACATTGCTCCAGAGGTTCTCTCCAAGAAAGAGTACGATGGCAAGATTGCAGATGTCTGGTCATGTGGGGTGACTTTGTACGTGATGCTGGTCGGCGCTTATCCTTTCGAAGATCCAGAGGATCCCAAAAACTTTAGAAAAACCATTGGGAGAATATTAAGCGCCCAATATTCAATACCGAACTATGTATACATATCTGCAGAATGCAGACACCTGCTGTCAAGGA

Fln Alignment:

Contig20217___DRYELVKDIGSGNFGVARLVRDKKTRELVAVKYIERGQKIDENVRREIINHRSLRHPNIVRFKE
B8LKB4_______________DRYELVKDIGSGNFGVARLMRDKQTKELVAVKYIERGEKIDENVQREIINHRSLKHPNIVRFRE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain