SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20206

Length: 563 nt

UniGene Fasta

>sp_v3.0_unigene20206
AATGTATTTTTGCCACGAACATCTTTGAGTCTGGAGATTTTACAACTTTTACGCAGTTTTGAAACAAAGATCCCACTGTTTGGGAATAGTGATGACCAAGCTGACAGGAGGAGGCCTTCACCTGGTGGACTGTATTACCTTTCATATTTGGATCGTGATATGCTTTTGGGGCGCGCACTAGGTGGTGGTGGAGTTTTCATTTTCAGTCGGACACAACCCTTTCAAGTGTAACTGTCCGCAGAGTCTCTATTTTTTATAACTTCCAGCCAATTTGCTCCTTTGCAATGGTTGACTTTATCAAGTAATTTCATTCATGATAATAAAACACATTGTATTGGATTATATTGTGCATTGGGGATTTTATTATGAACAAATGGCTACCTTCTACCTTAGGTACCCATAAACCCAGCCAGGAAGGCATTAGCGTTATTCTGTCATTTTAATGAAATAGTGTTTTTGATGACTTTGCAATCTATTTATTGATTTTTAAGATATTCATTTTTAATGTCTCCAGGGGTGGTAGCCCTGTTTGTGGATTATGTAACGTACATTCTGATTACATT

Ace file of the UniGene sp_v3.0_unigene20206

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative plastid-lipid-associated protein 10 [Arabidopsis thaliana] sp\|Q8W4F1.1\|PAP10_ARATH RecName: Full=Probable plastid-lipid-associated protein 10, chloroplastic; AltName: Full=Fibrillin-10; Flags: Precursor gb\|AAL32675.1\| Unknown protein [Arabidopsis	-	-	2.0e-14	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%

Source	Gene names
Sma3	OsI_34274; OsJ_32117; POPTRDRAFT_552393;

Source	GOs	Term	Type	e value	Identity
Sma3	structural molecule activity	GO:0005198	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Plastid lipid-associated protein/fibrillin conserved domain	IPR006843	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G46910.1	Plastid-lipid associated protein PAP / fibrillin family protein chr2:19272427-19273856 FORWARD LENGTH=284	1.0e-18	53%
RefSeq	Arabidopsis thaliana	NP_566091.1	putative plastid-lipid-associated protein 10 [Arabidopsis thaliana]	1.0e-18	53%
RefSeq	Populus trichocarpa	XP_002301454.1	predicted protein [Populus trichocarpa]	1.0e-19	57%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTP6

Fln msg: your sequence is shorter than subject: 77 - 316

Fln protein: NVFLPRTSLSLEILQLLRSFETKIPLFGNSDDQADRRRPSPGGLYYLSYLDRDMLLGRALGGGGVFIFSRTQPFQV*

Protein Length: 78

Fln nts: AATGTATTTTTGCCACGAACATCTTTGAGTCTGGAGATTTTACAACTTTTACGCAGTTTTGAAACAAAGATCCCACTGTTTGGGAATAGTGATGACCAAGCTGACAGGAGGAGGCCTTCACCTGGTGGACTGTATTACCTTTCATATTTGGATCGTGATATGCTTTTGGGGCGCGCACTAGGTGGTGGTGGAGTTTTCATTTTCAGTCGGACACAACCCTTTCAAGTGTAA___CTGTCCGCAGAGTCTCTATTTTTTATAACTTCCAGCCAATTTGCTCCTTTGCAATGGTTGACTTTATCAAGTAATTTCATTCATGATAATAAAACACATTGTATTGGATTATATTGTGCATTGGGGATTTTATTATGAACAAATGGCTACCTTCTACCTTAGGTACCCATAAACCCAGCCAGGAAGGCATTAGCGTTATTCTGTCATTTTAATGAAATAGTGTTTTTGATGACTTTGCAATCTATTTATTGATTTTTAAGATATTCATTTTTAATGTCTCCAGGGGTGGTAGCCCTGTTTGTGGATTATGTAACGTACATTCTGATTACATT

Fln Alignment:

Contig20206___FLPRTSLSLEILQLLRSFETKIPLFGNSDDQADRRRPSPGGLYYLSYLDRDMLLGRALGGGGVFIFSRTQPFQV
A9NTP6_______________FLPRTSLSLEILQLLRSFETKIPLLGNSDEQVDRR-PSPGGLYYLSYLDRDMLLGRALGGGGVFIFSRTQPFQV

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
239	33		66		0.997452
449	80	20			0.995493
452	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain