SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20194

Length: 1366 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene20194

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyubiquitin 14 n=9 Tax=core eudicotyledons RepID=UBQ14_ARATH	-	-	0.0	99%
FL-Next	sp=Polyubiquitin 14; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	98%
Sma3	Bi-ubiquitin	-	-	1.764e-08	-

Source	Gene names
Sma3	AT5G03240; At1g55060; At3g09790; At4g02890; At4g05050; At4g05320; At5g03240; At5g20620; At5g37640; B1472F02.6; CHLREDRAFT_130075; CHLREDRAFT_140045; CHLREDRAFT_196873; EgUbi; F11F8_38; F8A24.16; FUBI1; GSVIVT00035709001; GUbB1; GUbB2; H0303G06.8; LOC_Os03

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G02890.3	UBQ14 Ubiquitin family protein chr4:1278747-1279664 REVERSE LENGTH=305	99%
RefSeq	Arabidopsis thaliana	NP_974516.4	polyubiquitin 10 [Arabidopsis thaliana]	99%
RefSeq	Populus trichocarpa	XP_002316978.1	predicted protein [Populus trichocarpa]	99%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q3E7T8

Fln msg:

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF*

Protein Length: 307

Fln nts: CGTCGTGACCTTGGCTGTCACGCAATTCTGAGTTTTCGCTTTGCATAAGTCACTGCAATCGGTAGGGGAAGGAACAGAGAGCGTCTCTACCGTTCGAGTTCAGGTGGTGTGTTATCATTTATTAAAAACCAAT_-_ATGCAGATATTTGTAAAGACATTGACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCTGATACCATCGACAATGTCAAGGCGAAGATACAGGATAAGGAGGGAATCCCTCCCGACCAGCAGCGGCTCATCTTTGCTGGCAAGCAGTTGGAGGATGGACGCACTCTCGCTGACTACAACATCCAAAAGGAATCCACTCTCCACCTCGTTCTACGTCTGAGAGGTGGCATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACGATCACGCTTGAAGTTGAGAGCTCTGATACTATCGACAATGTGAAGTCTAAAATTCAAGACAAGGAGGGTATACCCCCAGATCAGCAGAGGTTGATCTTTGCAGGAAAACAGCTCGAGGATGGACGCACTCTTGCAGATTACAACATTCAGAAAGAATCGACTCTACACCTTGTCCTCCGTCTCAGGGGAGGAATGCAAATATTTGTCAAAACCTTGACTGGCAAGACCATCACCCTTGAAGTTGAGAGCTCTGATACTATTGATAATGTGAAGGCGAAGATCCAGGACAAAGAGGGGATTCCTCCAGATCAGCAGAGATTGATCTTTGCAGGGAAGCAACTTGAAGATGGGAGGACTTTGGCCGACTATAACATTCAGAAGGAATCCACCCTGCATCTTGTCCTGAGGTTACGTGGTGGGATGCAAATATTTGTGAAGACCTTGACGGGAAAGACTATTACATTGGAGGTTGAGAGCTCGGATACGATTGATAATGTGAAGGCGAAGATTCAGGACAAGGAAGGGATCCCACCTGATCAGCAGAGGCTCATTTTTGCTGGCAAGCAGCTGGAGGACGGGCGAACCCTTGCTGATTATAATATCCAGAAGGAATCCACGCTCCACCTTGTCTTACGTTTGCGTGGTGGGTTTTGA___GGTTTTAGGGTTACTTAATAGCTCCTACTTGTCTTTCTAGATGGTTGAAATCGGACTGGTATCTGCATTTATCTGTTATATGTTATAGGGTAATCATGTGTTATGTTGTCTATGGTCACTTCTTGGTTATGTTATGTTCGCTGAAGTCTAATGAAATAAAACATCTATTTTCATGTTTGTGTGAAGTATACTGGGATTCTCTTGATTTGGGGTGCAGCTGTTTTTACAATATTTGCCAAGAATATGGTAAAAAACAAGAAAGTAGTTTACAAATTGTTGAATTGTGAATAATATCTGTACGCTTTCAATAATGCA

Fln Alignment:

Contig20194___LKTNMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Q3E7T8_______________LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
206	85		14		0.993533
346	50	50			1.0
783		89		2	0.999999
1107		94	5		0.999996
1117		96		3	0.99245
1219	2			93	0.976545
1222	2	4	2	90	0.9465
1228		5		94	0.998744
1233	3	10		86	1.0
1239	88		11		0.923564
1240		40		60	1.0
1242		60	40		1.0
1244		40	60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain