SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20177

Length: 211 nt

UniGene Fasta

>sp_v3.0_unigene20177
CGTCGTGACCTTGGCTGTCACTCATTTCTTACATTCAGATTGCTGTGGCAGCAGCTCAAGAGGGAATACAGAGTTCTCGAACAATTCAGACGATGGCAATGGCGACGGGGTTATTCATGGCAGCAACGACAGTTCCTTCATCTTCGTCATCACTGGCGAAACCAAGAGGGGAGCTTTCACAAGGTACATTCGCCGTCTCTCTAAAACCCAA

Ace file of the UniGene sp_v3.0_unigene20177

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Elongation factor Tu; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	translational elongation	GO:0006414	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation elongation factor EFTu/EF1A, bacterial/organelle	IPR004541	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQG8

Fln msg: Distance to subject end: 406 aas, your sequence is shorter than subject: 39 - 446

Fln protein: MAMATGLFMAATTVPSSSSSLAKPRGELSQGTFAVSLKP

Protein Length: 40

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCTTACATTCAGATTGCTGTGGCAGCAGCTCAAGAGGGAATACAGAGTTCTCGAACAATTCAGACG_-_ATGGCAATGGCGACGGGGTTATTCATGGCAGCAACGACAGTTCCTTCATCTTCGTCATCACTGGCGAAACCAAGAGGGGAGCTTTCACAAGGTACATTCGCCGTCTCTCTAAAACCCAA

Fln Alignment:

Contig20177___MAMATGLFMAATTVPSSSSSLAKPRGELSQGTFAVSLKP
C0PQG8_______________MAMAMGLSMAATTVPSSSSSMAKPRGELSQGTFSVSLKP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain