SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20171

Length: 2250 nt

UniGene Fasta

>sp_v3.0_unigene20171
CGTCGTGACCTTGGCTGTCACTCAATCTTGGCCATTTTTCTTATTGTTTTGCCGTTGGTTTAATCTAGTTAAGTATTGACAGCTTTTTAAAGGCGCTATCTCCACCATTTTTGAGGATCAATTCCATGCATTTTTCTGATACAACACCAGTGTATTCATACAAATTCATCAATTCAAGAAGAAAGTGGTGAAAACCCTCTGTATCAGGTTATTGAAGGCTCTACAGTGGAATTGCTAATCCCCAAAATCTCATCCCACTGCTGGTTTTGCCCATTTAACCCATTTAAGGAATAAAAAACAGTGGAAACCCTACAGGGTTCCGCGAATTTTTTTAATTGGGTGCCCGTTTAGATCGCAGGTTCCAGTGGGCTCTGTAGGCGGTGGGATTGAGGGTTTTTTAAAGCGGCATGAGGTTGGAGTGTGAAACAGTCATGGTGACGCCTAGGGTCTCGCCTGTGGTGGGGGATTGGGGTGTGGGAGGAGGCATTAAGAAGGAAGCTGTGCAGGAAGCCCTGGTGGCGTCATGCAGAAGAGAGGAGGATTGGGCGGCCGACAGGGATCCATGTGACCAGAGGATAATGCAAGGCTTTCCTGTTTCCACGACAAATAATTTGGCTGGCTCTCCTCAGCAGAAATTGACAGTGGGGTATGCTCTTACATCCAAGAAGATTAAGAGCTTCCTGCAACCAAAGCTTGAAGGGCTGGCCAGGAAAAAGGGCATTACATTTGTTGCAATAGACAGGAACAGGCCTCTAGATGAGCAGGGGCCTTTTGATATTGTTTTGCATAAGCTGTCAGGGAGGGACTGGCGACAAAATCTGGAGGAATATAGGACTTCCCACCCGGAAGTTATTGTCCTTGATCCCCCAGATGCCATACAACATTTATATAATCGCCAGTCAATGCTTCAAGATGTTGCTGATTTAGACCTGTGTCATTGTGAAGGTACAGTTGGTGTTCCAAAGCAACTGGTTATAACTGGGGACCCTGCTTCCATTCCCAATGCCGTTGCTAAAGCGGGGCTAAAGCTGCCACTGGTTGCCAAACCATTGGTAGTGGATGGCACAGCGAAATCACATGCATTGTCACTAGCATATGATCAGTTGAGCCTCTCAGAGCTTGACCCTCCTCTGGTGCTCCAAGAGTTTGTAAATCATGGTGGAGTGCTTTTCAAGGTTTACATTGTTGGGGACACTGTTAAAGTAGTGCGAAGGTTCTCTTTACCTGATGTGGATGAAAGTGCATCTTTGGGCTATGGAGTGATTCCCTTTCCTAGGGTGTCAAGCGCTGCAGCTTCAGCTGATGATGCAGATTTAGATCCACATGTTGGGGAGTTGCCTCCAACTTTGTTGCTTGATAAACTTGCAACCGAACTCCGTCGAAGGCTGGGACTCCGACTTTTTAATTTAGACATCATTCGTGAACATGGAACAAGAGATCACTACTATGTTATTGATATCAACTATTTTCCTGGCTATGGAAAAATGCCCGGATATGAGCACATTTTCACGGACTTTCTTTTAAGCCTAGTACAAGGAAAGCATCGAAACATCACAGGAGCTGGTATCTGCAGCGTGGATAGTAATGACTGTTAATGATACTGCCTTAGAATAGAAATTCATACCATCTTACCTCGTGTTTTCAGTTTTAAATATCAGCCACGTGCAACATCTGAATGTGTCAAATTTAGGCGTTTGACAGATACTTCCAGCTCAATCAGAGAGATCATGGAGATGCAACATTGACCCAATTTCCGGATGAGATTATTTTTACCAAATGTCCTCATTGCACAGACATTGTTTTTCAGGTATTTTGTTTGGCCAAAGGGCACGTTCCTGTTGTATATTTCTGTGCAATGCTGTTTTCTCCCACAGGTCAATTCTGTCTCTGCTTAAATCGGAATTTAGGTTTGGAGGCAGGTGGCCCAGTGGTCATACAGGGTGCAAAGAACAATGGAAGTTTCAGCTTACTATCCAGCCTTTGCAGTGGGCTCTTACCCCGCTCCGGAGTCCATCCAGGCAAAACGATGGCTTCTTTTATGCTGTTCTTGTGCATGGGCCTCTGTAGATAACATGCGGGCAAAGACGGATTTATTGTATATAATTTTGCATAACGACTCCTTAGTCATTGATTCATATGTTTCTGTTGTCAATTGCATTGGAATAATTTCTAATCTCTGATCTGATCTTTGATGTTGGAATTTTATTACATGAAAAATGTGAATCTAATTATTAAAGGAATATGGAGGTT

Ace file of the UniGene sp_v3.0_unigene20171

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	inositol phosphate kinase [Glycine max]	-	-	63%
FL-Next	sp=Inositol-tetrakisphosphate 1-kinase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	71%
Sma3	Chromosome chr18 scaffold_1, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00015024001;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	inositol tetrakisphosphate 1-kinase activity	GO:0047325	Molecular Function	-
Sma3	inositol-1,3,4-trisphosphate 5/6-kinase activity	GO:0035300	Molecular Function	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	inositol trisphosphate metabolic process	GO:0032957	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATP-grasp fold	IPR011761	-	-
Sma3	Inositol-tetrakisphosphate 1-kinase, plant	IPR017427	-	-
Sma3	Inositol-tetrakisphosphate 1-kinase	IPR008656	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G08170.2	-	71%
RefSeq	Arabidopsis thaliana	NP_567334.1	inositol-tetrakisphosphate 1-kinase 2 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002306515.1	predicted protein, partial [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SUG3

Fln msg: your sequence is longer than subject: 396 - 353

Fln protein: MRLECETVMVTPRVSPVVGDWGVGGGIKKEAVQEALVASCRREEDWAADRDPCDQRIMQGFPVSTTNNLAGSPQQKLTVGYALTSKKIKSFLQPKLEGLARKKGITFVAIDRNRPLDEQGPFDIVLHKLSGRDWRQNLEEYRTSHPEVIVLDPPDAIQHLYNRQSMLQDVADLDLCHCEGTVGVPKQLVITGDPASIPNAVAKAGLKLPLVAKPLVVDGTAKSHALSLAYDQLSLSELDPPLVLQEFVNHGGVLFKVYIVGDTVKVVRRFSLPDVDESASLGYGVIPFPRVSSAAASADDADLDPHVGELPPTLLLDKLATELRRRLGLRLFNLDIIREHGTRDHYYVIDINYFPGYGKMPGYEHIFTDFLLSLVQGKHRNITGAGICSVDSNDC*

Protein Length: 397

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTTGGCCATTTTTCTTATTGTTTTGCCGTTGGTTTAATCTAGTTAAGTATTGACAGCTTTTTAAAGGCGCTATCTCCACCATTTTTGAGGATCAATTCCATGCATTTTTCTGATACAACACCAGTGTATTCATACAAATTCATCAATTCAAGAAGAAAGTGGTGAAAACCCTCTGTATCAGGTTATTGAAGGCTCTACAGTGGAATTGCTAATCCCCAAAATCTCATCCCACTGCTGGTTTTGCCCATTTAACCCATTTAAGGAATAAAAAACAGTGGAAACCCTACAGGGTTCCGCGAATTTTTTTAATTGGGTGCCCGTTTAGATCGCAGGTTCCAGTGGGCTCTGTAGGCGGTGGGATTGAGGGTTTTTTAAAGCGGC_-_ATGAGGTTGGAGTGTGAAACAGTCATGGTGACGCCTAGGGTCTCGCCTGTGGTGGGGGATTGGGGTGTGGGAGGAGGCATTAAGAAGGAAGCTGTGCAGGAAGCCCTGGTGGCGTCATGCAGAAGAGAGGAGGATTGGGCGGCCGACAGGGATCCATGTGACCAGAGGATAATGCAAGGCTTTCCTGTTTCCACGACAAATAATTTGGCTGGCTCTCCTCAGCAGAAATTGACAGTGGGGTATGCTCTTACATCCAAGAAGATTAAGAGCTTCCTGCAACCAAAGCTTGAAGGGCTGGCCAGGAAAAAGGGCATTACATTTGTTGCAATAGACAGGAACAGGCCTCTAGATGAGCAGGGGCCTTTTGATATTGTTTTGCATAAGCTGTCAGGGAGGGACTGGCGACAAAATCTGGAGGAATATAGGACTTCCCACCCGGAAGTTATTGTCCTTGATCCCCCAGATGCCATACAACATTTATATAATCGCCAGTCAATGCTTCAAGATGTTGCTGATTTAGACCTGTGTCATTGTGAAGGTACAGTTGGTGTTCCAAAGCAACTGGTTATAACTGGGGACCCTGCTTCCATTCCCAATGCCGTTGCTAAAGCGGGGCTAAAGCTGCCACTGGTTGCCAAACCATTGGTAGTGGATGGCACAGCGAAATCACATGCATTGTCACTAGCATATGATCAGTTGAGCCTCTCAGAGCTTGACCCTCCTCTGGTGCTCCAAGAGTTTGTAAATCATGGTGGAGTGCTTTTCAAGGTTTACATTGTTGGGGACACTGTTAAAGTAGTGCGAAGGTTCTCTTTACCTGATGTGGATGAAAGTGCATCTTTGGGCTATGGAGTGATTCCCTTTCCTAGGGTGTCAAGCGCTGCAGCTTCAGCTGATGATGCAGATTTAGATCCACATGTTGGGGAGTTGCCTCCAACTTTGTTGCTTGATAAACTTGCAACCGAACTCCGTCGAAGGCTGGGACTCCGACTTTTTAATTTAGACATCATTCGTGAACATGGAACAAGAGATCACTACTATGTTATTGATATCAACTATTTTCCTGGCTATGGAAAAATGCCCGGATATGAGCACATTTTCACGGACTTTCTTTTAAGCCTAGTACAAGGAAAGCATCGAAACATCACAGGAGCTGGTATCTGCAGCGTGGATAGTAATGACTGTTAA___TGATACTGCCTTAGAATAGAAATTCATACCATCTTACCTCGTGTTTTCAGTTTTAAATATCAGCCACGTGCAACATCTGAATGTGTCAAATTTAGGCGTTTGACAGATACTTCCAGCTCAATCAGAGAGATCATGGAGATGCAACATTGACCCAATTTCCGGATGAGATTATTTTTACCAAATGTCCTCATTGCACAGACATTGTTTTTCAGGTATTTTGTTTGGCCAAAGGGCACGTTCCTGTTGTATATTTCTGTGCAATGCTGTTTTCTCCCACAGGTCAATTCTGTCTCTGCTTAAATCGGAATTTAGGTTTGGAGGCAGGTGGCCCAGTGGTCATACAGGGTGCAAAGAACAATGGAAGTTTCAGCTTACTATCCAGCCTTTGCAGTGGGCTCTTACCCCGCTCCGGAGTCCATCCAGGCAAAACGATGGCTTCTTTTATGCTGTTCTTGTGCATGGGCCTCTGTAGATAACATGCGGGCAAAGACGGATTTATTGTATATAATTTTGCATAACGACTCCTTAGTCATTGATTCATATGTTTCTGTTGTCAATTGCATTGGAATAATTTCTAATCTCTGATCTGATCTTTGATGTTGGAATTTTATTACATGAAAAATGTGAATCTAATTATTAAAGGAATATGGAGGTT

Fln Alignment:

Contig20171___PCDQRIMQGFPVSTTNNLAGSPQQKLTVGYALTSKKIKSFLQPKLEGLARKKGITFVAIDRNRPLDEQGPFDIVLHKLSGRDWRQNLEEYRTSHPEVIVLDPPDAIQHLYNRQSMLQDVADLDLCHCEGTVGVPKQLVITGDPASIPNXXXXXXXXXXXXXXXXXXDGTAKSHALSLAYDQLSLSELDPPLVLQEFVNHGGVLFKVYIVGDTVKVVRRFSLPDVD-ESASLGYGVIPFPRVXXXXXXXXXXXLDPHVGELPPTLLLDKLATEXXXXXXXXXFNLDIIREHGTRDHYYVIDINYFPGYGKMPGYEHIFTDFLLSLVQGK
Q9SUG3_______________PCSL-VIEAFPV----------KKSIIVGYALTSKKIKSFLQPKLEGLARNKGILFVAIDQNKPLSEQGPFDIVLHKQIGKEWRRILEEFRLAHPDVTVLDPPDAILHLRNRQSMLQCVADMNLSDSNGRVGVPKQLVIKKDASSIPEAVNNAGLRLPLVAKPLVADGSAKSHELSLAYDQHSLLKLEPPLVLQEFVNHGGVLFKVYIVGEAIRVVRRFSLPDVSRRELPKSAGVFRFPRVSCAAASADDADLDPSIAELPPRPLLERLAKELRRGLGLRLFNLDIIREHGTRDRFYVIDINYFPGYGKMPEYEHVFTDFLLSVVQSQ

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
1055	87		12		0.992554
1073	62		37		1.0
1084			11	88	0.923564
1086			11	88	0.923564
1123	81			18	0.999994
1247		10		90	0.90298
1443			10	90	0.90298
1444	90			10	0.90298
1446			10	90	0.90298
1450	10			90	0.90298
1451		10		90	0.90298
1452	90	10			0.90298
1456	90		10		0.90298
1458	90		10		0.90298
1462	90	10			0.90298
1464	10			90	0.90298
1495	90			10	0.90298
1496		10		90	0.90298
1498	90	10			0.90298
1822		80		20	0.995493
1823	80		20		0.995493
1824	80			20	0.995493
1825	80	20			0.995493
1826	20		80		0.995493
1827		20	80		0.995493
1828			80	20	0.995493
1896	88		11		0.999952
2096	11		88		0.923564
2097		11		88	0.923564
2100	88			11	0.923564
2123	40		54	4	1.0
2204		16		83	0.999991
2211	10			90	0.90298
2216	90	10			0.90298
2238		20	80		0.995493
2240	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain