SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20154

Length: 386 nt

UniGene Fasta

>sp_v3.0_unigene20154
CAAACCGGCAGCTGAATTGGTCAAACTTAATCCAACGAGTGAGTATGCACCAGGTCTGGAGGATACATTAATTCTAACCATGAAGGGCATAGCAGCTGGTATGCAGAACACTGGTTAGAAGGTGAGTCGATGTTATTTATAGATCTTAGATTGTTCTCATTTTTCTCATTTTATTGAAATTATTTTTATGCTTTAAATGGAGTTACGAGGGTTCATGTGCATTTATGGAGACTGGGGTTTCACAGGGGATGTGTCCCCAGGCATCTGGGATTCATCCCTTGTGTTCCAAGGACAAGGAGGACACACTGAGTATGTTTTCTCCCATCATTGGGAGTGCAGGGGATGGCTTCAGGGTATTCCCAACCCTTCCCTGTACAAAAAGGCTG

Ace file of the UniGene sp_v3.0_unigene20154

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphoenolpyruvate carboxylase n=6 Tax=Poaceae RepID=Q84XH0_ORYSI	-	-	2.0e-13	100%
FL-Next	tr=Phosphoenolpyruvate carboxylase; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	100%
Sma3	Phosphoenolpyruvate carboxylase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Oxaloacetate decarboxylase.	EC:4.1.1.3	-	1.278e-06	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Arginine and proline metabolism	00330		1.278e-06	%
Sma3	Pyruvate metabolism	00620		1.278e-06	%
Sma3	Metabolic pathways	01100		1.278e-06	%
Sma3	Phosphoenolpyruvate carboxylase.	EC:4.1.1.31	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Pyruvate metabolism	00620	%
Sma3	Methane metabolism	00680	%
Sma3	Carbon fixation in photosynthetic organisms	00710	%
Sma3	Carbon fixation pathways in prokaryotes	00720	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	AT1G53310; At1g53310; At2g42600; At3g14940; B1131G08.12; F12M16.21; F14N22.13; GPEPC; GSVIVT00018735001; GSVIVT00027811001; GmPEPC15; GmPEPC7; K15M2.8; LjPEPC1; LjPEPC2; Nsppc1; Nsppc2; Nsppc3; OJ1134_F06.2-1; OJ1484_G09.129-1; OSJNBa0016I09.26; OSJNBa005

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	phosphoenolpyruvate carboxylase activity	GO:0008964	Molecular Function	-
Sma3	tricarboxylic acid cycle	GO:0006099	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	carbon fixation	GO:0015977	Biological Process	-
Sma3	photosynthesis	GO:0015979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001449	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-
Sma3	Phosphoenolpyruvate carboxylase, active site	IPR018129	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G53310.1	ATPPC1, PEPC1, ATPEPC1, PPC1 phosphoenolpyruvate carboxylase 1 chr1:19884261-19888070 REVERSE LENGTH=967	2.0e-15	89%
RefSeq	Arabidopsis thaliana	NP_175738.1	phosphoenolpyruvate carboxylase 1 [Arabidopsis thaliana]	3.0e-15	89%
RefSeq	Populus trichocarpa	XP_002302820.1	predicted protein [Populus trichocarpa]	1.0e-16	97%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9SWG7

Fln msg: your sequence is shorter than subject: 39 - 955

Fln protein: KPAAELVKLNPTSEYAPGLEDTLILTMKGIAAGMQNTG*

Protein Length: 40

Fln nts: CAAACCGGCAGCTGAATTGGTCAAACTTAATCCAACGAGTGAGTATGCACCAGGTCTGGAGGATACATTAATTCTAACCATGAAGGGCATAGCAGCTGGTATGCAGAACACTGGTTAG___AAGGTGAGTCGATGTTATTTATAGATCTTAGATTGTTCTCATTTTTCTCATTTTATTGAAATTATTTTTATGCTTTAAATGGAGTTACGAGGGTTCATGTGCATTTATGGAGACTGGGGTTTCACAGGGGATGTGTCCCCAGGCATCTGGGATTCATCCCTTGTGTTCCAAGGACAAGGAGGACACACTGAGTATGTTTTCTCCCATCATTGGGAGTGCAGGGGATGGCTTCAGGGTATTCCCAACCCTTCCCTGTACAAAAAGGCTG

Fln Alignment:

Contig20154___KPAAELVKLNPTSEYAPGLEDTLILTMKGIAAGMQNTG
Q9SWG7_______________KPAAELVKLNPTSEYAPGLEDTLILTMKGIAAGMQNTG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
206		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain