SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20123

Length: 420 nt

UniGene Fasta

>sp_v3.0_unigene20123
AACATCGTGCTGAAAGCATCGCAGAGGAAAATAATATCAGGCGTCAACATTGTAGACAATATGTTCAGTGGCTCTCGGAAGGGCGTGGACATTGTTCAGTTGGTGGGTAGATTTGAATCGATTGATAAGACGGTTGTTGACAAGAACAATGCGCTTGGAATGAGGCTTAAATCAACGGTTGCTCGAGGCACAGTGAAGGGCAATGGAACCACATGGGCCATAGATTTTAATCCCTTCCTGCTCTTCCCAAACCTTGTTCAGAATGTTCAGTATTCTTTCTATACATCTGATGCTTCGTTTCCCAGGCATGCTCTCAGAAATGTGTCTCACAACAAAGTGGTGATCGAAGCGGATACCCAAGTATCTGCAACAGTCGCAGTGCTGGTAGATCAGAGTGCCACTTTTGTTCAAGGCGATGGG

Ace file of the UniGene sp_v3.0_unigene20123

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polygalacturonase QRT3 [Arabidopsis thaliana] ref\|NP_001078410.1\| Polygalacturonase QRT3 [Arabidopsis thaliana] sp\|O49432.1\|QRT3_ARATH RecName: Full=Polygalacturonase QRT3; Short=AtQRT3; Short=PG QRT3; AltName: Full=Pectinase QRT3; AltName: Full=Protein Q	-	-	3.0e-31	55%
FL-Next	sp=Polygalacturonase QRT3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%

Source	Gene names
Sma3	AT4g20040; At4g20040; At4g20050; F18F4.150; GSVIVT00029641001; GSVIVT00030119001; OSJNBa0070C17.16; Os04g0613200; OsI_17366; OsJ_16135; PHYPADRAFT_198113; PHYPADRAFT_227125; POPTRDRAFT_414958; POPTRDRAFT_553848; POPTRDRAFT_588705; POPTRDRAFT_676368; POPTR

Source	GOs	Term	Type	e value	Identity
Sma3	polygalacturonase activity	GO:0004650	Molecular Function	0.0	-
Sma3	microsporogenesis	GO:0009556	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Parallel beta-helix repeat	IPR006626	-	0.0	-
Sma3	Pectin lyase fold	IPR012334	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G20050.1	QRT3 Pectin lyase-like superfamily protein chr4:10849911-10852090 REVERSE LENGTH=481	2.0e-38	55%
RefSeq	Arabidopsis thaliana	NP_001078410.1	Polygalacturonase QRT3 [Arabidopsis thaliana]	3.0e-38	55%
RefSeq	Populus trichocarpa	XP_002337878.1	predicted protein, partial [Populus trichocarpa]	1.4013e-45	56%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: O49432

Fln msg: STOP codon was not found. Distance to subject end: 7 aas, your sequence is shorter than subject: 140 - 481

Fln protein: NIVLKASQRKIISGVNIVDNMFSGSRKGVDIVQLVGRFESIDKTVVDKNNALGMRLKSTVARGTVKGNGTTWAIDFNPFLLFPNLVQNVQYSFYTSDASFPRHALRNVSHNKVVIEADTQVSATVAVLVDQSATFVQGDG

Protein Length: 141

Fln nts: AACATCGTGCTGAAAGCATCGCAGAGGAAAATAATATCAGGCGTCAACATTGTAGACAATATGTTCAGTGGCTCTCGGAAGGGCGTGGACATTGTTCAGTTGGTGGGTAGATTTGAATCGATTGATAAGACGGTTGTTGACAAGAACAATGCGCTTGGAATGAGGCTTAAATCAACGGTTGCTCGAGGCACAGTGAAGGGCAATGGAACCACATGGGCCATAGATTTTAATCCCTTCCTGCTCTTCCCAAACCTTGTTCAGAATGTTCAGTATTCTTTCTATACATCTGATGCTTCGTTTCCCAGGCATGCTCTCAGAAATGTGTCTCACAACAAAGTGGTGATCGAAGCGGATACCCAAGTATCTGCAACAGTCGCAGTGCTGGTAGATCAGAGTGCCACTTTTGTTCAAGGCGATGGG

Fln Alignment:

Contig20123___VLKASQRKIISGVNIVDNMFSGSRKGVDIVQLVGR---FESIDKTVVDKNNALGMRLKSTVARGTVKGNGTTWAIDFNPFLLFPNLVQNVQYSFYTSDAS-FPRHALRNVSHNKVVIEADTQVSATVAVLVDQ
O49432_______________ILLKSIAGYIRGVSIVDNMFSGSGHGVQIVQLDQRNTAFDDVGQVVVDRNSVNGMVEKSTVARGSVDGNGTSWTVDFNPVLLFPDLINHVQYTLVASEAGVFPLHALRNVSDNRVVVETNAPVTGTVYVTVNQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain