SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene20016

Length: 374 nt

UniGene Fasta

>sp_v3.0_unigene20016
GAGAGGTTTTCTGACGTGAATTCTGCGCGCGATGGCGCAGAAATTCGCGTTGAAAGTGCAGTTAAATTGCGAAAAATGCAAGCAGAGAGCCATGGAGGCGGTTGCAGGGGTCGAAGGCGTTGTGTCGGTAGCAGCTGACTTGAAAGAGCAGAAGATGACTGTAATTGGGGATGCAGATCCGGTGTGCGTGACGGCTAGTCTCAGAAAATTTGGATTTTGCTGAATTGGTGAGCGTCGGACCTTCTAAAGAACCCGAGAATACGGATGCGGAAGGGGAGAAAAAGCCTGGTGGTGAACAAGACCCGCCGAAACAGATTCATACTTGTGTCATTATTCCAGCAAGCTGTTATCACTGCACCAACTACACTTTTACT

Ace file of the UniGene sp_v3.0_unigene20016

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	heavy-metal-associated domain-containing protein [Arabidopsis thaliana] ref\|NP_001030928.1\| heavy-metal-associated domain-containing protein [Arabidopsis thaliana] emb\|CAA71173.1\| hypothetical protein [Arabidopsis thaliana] gb\|AAL36161.1\| unknown protein	-	-	3.0e-07	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%

Source	GOs	Term	Type	e value	Identity
Sma3	metal ion binding	GO:0046872	Molecular Function	0.0	-
Sma3	metal ion transport	GO:0030001	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002327496.1	predicted protein, partial [Populus trichocarpa]	2.0e-11	54%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMX0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 42 aas, your sequence is shorter than subject: 64 - 156

Fln protein: MAQKFALKVQLNCEKCKQRAMEAVAGVEGVVSVAADLKEQKMTVIGDADPVCVTASLRKFGFC*

Protein Length: 65

Fln nts: GAGAGGTTTTCTGACGTGAATTCTGCGCGCG_-_ATGGCGCAGAAATTCGCGTTGAAAGTGCAGTTAAATTGCGAAAAATGCAAGCAGAGAGCCATGGAGGCGGTTGCAGGGGTCGAAGGCGTTGTGTCGGTAGCAGCTGACTTGAAAGAGCAGAAGATGACTGTAATTGGGGATGCAGATCCGGTGTGCGTGACGGCTAGTCTCAGAAAATTTGGATTTTGCTGAATTGGTGAGCGTCGGACCTTCTAAAGAACCCGAGAATACGGATGCGGAAGGGGAGAAAAAGCCTGGTGGTGAACAAGACCCGCCGAAACAGATTCATACTTGTGTCATTATTCCAGCAAGCTGTTATCACTGCACCAACTACACTTTTACT

Fln Alignment:

Contig20016___MAQKFALKVQLNCEKCKQRXXXXXXXXXXXXXXXXDLKEQKMTVIGDADPVCVTASLRKFGF
A9NMX0_______________MSQKIVLKVQLNCEKCVRRAMETLSGIEGVVSIAVDEKNKQITVIGDADPVSLTASLRKFGF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain