SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene19998

Length: 2036 nt

UniGene Fasta

>sp_v3.0_unigene19998
CGTCGTGACCTTGGCTGTCACGGGATTCGCTCCTAATTCTTGATCTTTACTCAAAACATCGGGAGTCGGTATTTCACAAATCCAAGCAGATATATCCCTGTCATCCATATTTTCTTTTTCAGTCTGCAATACAGATGGTTATTCGAGATACGATTGATCATGCTTGAAGGCTATGCCTATGCTTGCGGAAACATACCGTGACAGCTTTGAGACGACTTCGGGAGGTAGCAGCGTGGATCTGGTAGGAATGGCTCTACCAGGTTTGGCCCCTAATTTGTCTTCTGCTTCAGTTTCAGCTTCAGCGTCAGAAGATTCTGCCAAGAAAATAAGGAAACCCTATACCATCACCAAGTCCAGAGAGAGCTGGTCTGAGCAAGAGCACGATAAATTCCTCGAAGCCCTTCAACTGTTTGATCGTGATTGGAAAAAGATTGAAGCTTTTGTAGGATCAAAGACTGTCATACAGATTCGGAGTCATGCACAAAAGTACTTCTTGAAGGTCCAAAAGAATGGCACAAGAGAACATGTACCACCTCCTCGTCCAAAACGCAAAGCATCTCATCCATACCCACAGAAGGCCTCAAAAAATGTTCCTGTGTCACAGCAAGTATCAACTGCTTTTCCAACTGCTGCTACTCAACTAGATTCTGGATATTATCCAAGGGCAGAGTCGTCTTCCATACTCACCAAATCTGGCTCGTCATGCCCAACTGTTTCTTCCTGGGTTCATCATACCATACCACCAACAGATGTTTCGTTTGTGGAAAAAGATGATGGTGGGCCTCCAGGCATTGCAACAGGGAATAATTGCAGTAGTGGTAGCACTGAGAGTTCTCCTCCTATGTGGCCACCCTGTTCTGAAATCCCTGAGAAAGTCAAACCAGATTTTTCACAAGTTTATAAGTTCATTGGCAGTGTCTTTGACCCGAGCACAACTGATCACTTGAAGAAGCTTAAAGAAATGGATCCAATTGATCTTGAAACTGTGTTGTTACTCATGAGGAATCTTTCCATCAACTTGTCCAGCCCTGATTTTGAAGAGAACAAATTATTTTTATCAGTATATGACATGAATCCTGAAGATGCTGAACCTGCTATAGAAAATCAAACAGATGAGTGCGTGGCAGTTCCAGGCACTGCTGCAAAGCAGCCATCGGATCATTGGAATGGTCCTCTCAGATCTGTTCATCTGGGGTCAGTAAAAGGACATGAGAAAGAAGAACAAAATAGTCAACAGAAAAGCCATGATCTGAAAGGATCGTCAGACTCCAAACACTCTGATCTTGATGGCAGTTCTGTTAATGGTACTGCTGCTTCCTTCCATGGCAACCTAGCTAAGACTTGCGGCATGACAAGAAGCTGTTTTTCAAATGAAGCTCCAACATAAAATAGTACACGCGGGAGTATTGAGTTAGGCTTTCAAGATATTGTCGAGTGTGAATGTCTGGCTAAGCTGCTCATGTAATTTGTTATTTACTTATTCTATTTTGTGATACCTGTAATTTAAATGTTAGCTGTTGAGAGTGTATAGGTAAATCTCTGCCTTCAATAGTTTGAATTTGCAAAACGTAAGCCGGTTGGCTACCCGCGGACTGTACCATGAATTGGTGGCATGTAGAATTATTCTTTTCTAAATCATGCAAGTTGACCTCATAAAAGCTGCCATGTCTCAATTGTTTTGGCTTCTCTACATCTGTTGGCAGCTGTCATTATGCACTGATGGCATGTGGAAATTCAGGTAAAGATTAGCCGAGTTCACAGTATTTTGAAGTTTCAAACGCAGCTGAGCTGATGAGCATCGTCCTCCATTTCTTTGCCAGATATACTAGTCCAGATATACACTAGTAGATGCTCATGGAATATATAATTGCTACAACAATTATTTAGTGACGTCCTATATGTTTATATCAGTCTTTTTATATCAGTTTTTTGGATTAATCACATCATTGGGATTGGGACGCTTTGAACCAACTAATGTGGTTCATCTTGTTTGTATATTTAAATTGTTATATAATATTATTGCAAATAAGAATACC

Ace file of the UniGene sp_v3.0_unigene19998

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MYB transcription factor MYB136 [Glycine max]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3		IPR014778	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G52660.2	Homeodomain-like superfamily protein chr5:21359423-21362037 REVERSE LENGTH=331	54%
RefSeq	Arabidopsis thaliana	NP_851177.1	myb family transcription factor [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002320823.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMI5

Fln msg:

Fln protein: MPMLAETYRDSFETTSGGSSVDLVGMALPGLAPNLSSASVSASASEDSAKKIRKPYTITKSRESWSEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTREHVPPPRPKRKASHPYPQKASKNVPVSQQVSTAFPTAATQLDSGYYPRAESSSILTKSGSSCPTVSSWVHHTIPPTDVSFVEKDDGGPPGIATGNNCSSGSTESSPPMWPPCSEIPEKVKPDFSQVYKFIGSVFDPSTTDHLKKLKEMDPIDLETVLLLMRNLSINLSSPDFEENKLFLSVYDMNPEDAEPAIENQTDECVAVPGTAAKQPSDHWNGPLRSVHLGSVKGHEKEEQNSQQKSHDLKGSSDSKHSDLDGSSVNGTAASFHGNLAKTCGMTRSCFSNEAPT*

Protein Length: 406

Fln nts: CGTCGTGACCTTGGCTGTCACGGGATTCGCTCCTAATTCTTGATCTTTACTCAAAACATCGGGAGTCGGTATTTCACAAATCCAAGCAGATATATCCCTGTCATCCATATTTTCTTTTTCAGTCTGCAATACAGATGGTTATTCGAGATACGATTGATCATGCTTGAAGGCT_-_ATGCCTATGCTTGCGGAAACATACCGTGACAGCTTTGAGACGACTTCGGGAGGTAGCAGCGTGGATCTGGTAGGAATGGCTCTACCAGGTTTGGCCCCTAATTTGTCTTCTGCTTCAGTTTCAGCTTCAGCGTCAGAAGATTCTGCCAAGAAAATAAGGAAACCCTATACCATCACCAAGTCCAGAGAGAGCTGGTCTGAGCAAGAGCACGATAAATTCCTCGAAGCCCTTCAACTGTTTGATCGTGATTGGAAAAAGATTGAAGCTTTTGTAGGATCAAAGACTGTCATACAGATTCGGAGTCATGCACAAAAGTACTTCTTGAAGGTCCAAAAGAATGGCACAAGAGAACATGTACCACCTCCTCGTCCAAAACGCAAAGCATCTCATCCATACCCACAGAAGGCCTCAAAAAATGTTCCTGTGTCACAGCAAGTATCAACTGCTTTTCCAACTGCTGCTACTCAACTAGATTCTGGATATTATCCAAGGGCAGAGTCGTCTTCCATACTCACCAAATCTGGCTCGTCATGCCCAACTGTTTCTTCCTGGGTTCATCATACCATACCACCAACAGATGTTTCGTTTGTGGAAAAAGATGATGGTGGGCCTCCAGGCATTGCAACAGGGAATAATTGCAGTAGTGGTAGCACTGAGAGTTCTCCTCCTATGTGGCCACCCTGTTCTGAAATCCCTGAGAAAGTCAAACCAGATTTTTCACAAGTTTATAAGTTCATTGGCAGTGTCTTTGACCCGAGCACAACTGATCACTTGAAGAAGCTTAAAGAAATGGATCCAATTGATCTTGAAACTGTGTTGTTACTCATGAGGAATCTTTCCATCAACTTGTCCAGCCCTGATTTTGAAGAGAACAAATTATTTTTATCAGTATATGACATGAATCCTGAAGATGCTGAACCTGCTATAGAAAATCAAACAGATGAGTGCGTGGCAGTTCCAGGCACTGCTGCAAAGCAGCCATCGGATCATTGGAATGGTCCTCTCAGATCTGTTCATCTGGGGTCAGTAAAAGGACATGAGAAAGAAGAACAAAATAGTCAACAGAAAAGCCATGATCTGAAAGGATCGTCAGACTCCAAACACTCTGATCTTGATGGCAGTTCTGTTAATGGTACTGCTGCTTCCTTCCATGGCAACCTAGCTAAGACTTGCGGCATGACAAGAAGCTGTTTTTCAAATGAAGCTCCAACATAA___AATAGTACACGCGGGAGTATTGAGTTAGGCTTTCAAGATATTGTCGAGTGTGAATGTCTGGCTAAGCTGCTCATGTAATTTGTTATTTACTTATTCTATTTTGTGATACCTGTAATTTAAATGTTAGCTGTTGAGAGTGTATAGGTAAATCTCTGCCTTCAATAGTTTGAATTTGCAAAACGTAAGCCGGTTGGCTACCCGCGGACTGTACCATGAATTGGTGGCATGTAGAATTATTCTTTTCTAAATCATGCAAGTTGACCTCATAAAAGCTGCCATGTCTCAATTGTTTTGGCTTCTCTACATCTGTTGGCAGCTGTCATTATGCACTGATGGCATGTGGAAATTCAGGTAAAGATTAGCCGAGTTCACAGTATTTTGAAGTTTCAAACGCAGCTGAGCTGATGAGCATCGTCCTCCATTTCTTTGCCAGATATACTAGTCCAGATATACACTAGTAGATGCTCATGGAATATATAATTGCTACAACAATTATTTAGTGACGTCCTATATGTTTATATCAGTCTTTTTATATCAGTTTTTTGGATTAATCACATCATTGGGATTGGGACGCTTTGAACCAACTAATGTGGTTCATCTTGTTTGTATATTTAAATTGTTATATAATATTATTGCAAATAAGAATACC

Fln Alignment:

Contig19998___MPMLAETYRDSFETTSGGSSVDLVGMALPGLAPNLXXXXXXXXXXXXXX----KKIRKPYTITKSRESWSEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTREHVPPPRPKRKASHPYPQKASKNVPVSQQVSTAFPTAATQLDSGYYPRAESSSILTKSGSSCPTVSSWVHHTIPPTDVSFVEKDDGGPPGIATGNNCSSGSTESSPPMWPPCSEIPEK--------VKPDFSQVYKFIGSVFDPSTTDHLKKLKEMDPIDLETVLLLMRNLSINLSSPDFEENKLFLSVYDMNPEDAEPAIENQTDECVAVPGTAAKQPSDHWNGPLRSVHLGSVKGHEKEEQNSQQKSHDLKGSSDSKHSDLDGSSVNGTAASFHGNLAKTCGMTRSCFSNEAPT
B8LMI5_______________MPMLVETYRDSFETSSGGSSVDLVGMALPGLAPNLSAAAVSVSVSASASEDSAKKIRKPYTITKSRESWSEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTREHVPPPRPKRKASHPYPQKASKNVPVSQQVSPAFPPATSQLDSGYYPRAESSSILTKSGSSCPTVSSWVHHNIPSIDVSFVEKDDGGPAGIATANNCSSGSTESSPHTWPPHSEIPEKGSESLPVRVKPDFSQVYKFIGSVFDPSTTGHLKKLKEMDPIDLETVLLLMRNLSINLSSPDFEEHKLFLSVCDMNPQDAGPVIANQTDECMAVPGTAATQPSDLWNDPLRSVNLGSVKGHEKEDPNSRQKSHDLKGSADSKHSDPDGTSVNGTAASFHSNLAKTCGMTRSCFSNEAPT

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
85	66		33		0.997452
86	66			33	0.997452
87		33	66		0.997452
88		66	33		0.997452
89	66			33	0.997452
92		33		66	0.997452
93	66	33			0.997452
97		66	33		0.997452
98		66	33		0.997452
105		33		66	0.997452
106		66		33	0.997452
736	25	75			0.996473
737		75		25	0.996473
738	75		25		0.996473
989	10		90		0.90298
990		10		90	0.90298
991		10		90	0.90298
992	10		90		0.90298
994			10	90	0.90298
995	90			10	0.90298
1162	25		75		0.996473
1429	66			33	0.997452
1784		35	64		1.0
1885	30			70	1.0
1914		50		50	1.0
1963		25		75	0.996473
1995	25		75		0.996473
2016	50		50		1.0
2021	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain