SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene19904

Length: 1406 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene19904

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Metal tolerance protein 5 n=4 Tax=Poaceae RepID=MTP5_ORYSJ	-	-	0.0	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Metal tolerance protein	-	-	3.1e-26	-

Source	Gene names
Sma3	AT2G39450; At1g16310; At2g39450; At3g58060; F3O9.11; GSVIVT00001791001; GSVIVT00002080001; GSVIVT00024731001; GSVIVT00025407001; GSVIVT00029533001; LOC_Os03g12530; MICPUCDRAFT_52662; MICPUN_55479; MTP11.1; MTP11.2; MTPC3; OJ1281_H05.16; OJ1448_G06.19; OJ1

Source	GOs	Term	Type	Identity
Sma3	late endosome	GO:0005770	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	manganese ion transmembrane transporter activity	GO:0005384	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	cation transmembrane transporter activity	GO:0008324	Molecular Function	-
Sma3	manganese:hydrogen antiporter activity	GO:0010486	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	cation transport	GO:0006812	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	response to manganese ion	GO:0010042	Biological Process	-
Sma3	cellular manganese ion homeostasis	GO:0030026	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-
Sma3	response to copper ion	GO:0046688	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Cation efflux protein	IPR002524	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G39450.1	MTP11, ATMTP11 Cation efflux family protein chr2:16471744-16473735 REVERSE LENGTH=394	70%
RefSeq	Arabidopsis thaliana	NP_181477.1	putative Mn-specific cation diffusion facilitator transporter [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002315247.1	metal tolerance protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTR8

Fln msg: W2: There is no M at the beginning,

Fln protein: EKNAWRLNFDGIPGPEKPRRRLNVSEKGIEEAEPSNQPSPLLEHGIEKAMPSEENAWRLNFNRFPRPERKETPKGCLIVSGPCSGDGVAKYYQQQGEMLDGFAEMDLVTDNCALPGMSKEDSDKLARSETIAIHLSNIANVVLFIAKVYASIKSGSLAIIASTLDSLLDLLSGFILWFTAFKMQSSNPYLYPIGKKRMQPLGILVFASVMATLGLQILLESIRQLVYKEDGLSLDGDKWHWVVGIMVSVTFVKLFLVLYCRSFTNEIVKAYAQDHFFDVITNTIGLIAAILASSTQYRWIDPAGAIVLALYTIRTWSSTVLENVNSLVGKTASPDYLQKLTYLCWNHHKAILHIDTVRAYTFGSHYFVEVDIVLPRDMPLHKAHDIGEALQEKLESLPDIERAFVHLDYEYSHRPEHGKSYS*

Protein Length: 424

Fln nts: GAGAAGA_-_ATGCATGGCGCTTGAATTTCGATGGGATTCCCGGGCCTGAAAAGCCTAGGCGCCGCTTGAATGTGTCCGAAAAAGGAATAGAGGAGGCTGAGCCCAGCAATCAGCCATCCCCTCTGCTAGAACATGGAATCGAGAAGGCTATGCCCAGCGAGGAGAATGCATGGCGCTTGAATTTCAATCGATTTCCTAGGCCAGAGAGGAAGGAAACGCCTAAGGGCTGCTTGATTGTGTCAGGTCCTTGTAGTGGTGATGGAGTAGCCAAATATTATCAGCAGCAGGGGGAAATGCTTGACGGATTTGCAGAAATGGATTTGGTCACTGATAATTGTGCTTTGCCTGGCATGTCTAAGGAAGACAGCGACAAGCTTGCACGAAGTGAAACAATTGCAATCCATTTATCCAACATAGCAAACGTTGTTCTTTTCATTGCAAAAGTATATGCATCGATAAAGAGTGGTTCGCTAGCCATAATTGCTTCAACATTGGACTCACTTCTGGATCTTCTATCAGGCTTTATTCTTTGGTTCACTGCATTTAAGATGCAGTCATCAAATCCTTACCTTTATCCCATTGGGAAGAAACGCATGCAGCCATTGGGAATTCTGGTTTTTGCTTCAGTCATGGCTACATTGGGATTGCAGATCTTGTTAGAATCTATTCGACAACTTGTATACAAGGAGGATGGTTTATCTTTAGATGGTGACAAATGGCATTGGGTGGTTGGAATTATGGTTTCAGTTACTTTTGTGAAGTTGTTCCTCGTATTGTATTGTCGAAGTTTTACTAATGAGATTGTGAAGGCATATGCTCAAGATCATTTCTTTGATGTGATCACCAACACAATTGGTCTAATTGCTGCTATTCTTGCAAGTAGTACTCAATACCGGTGGATAGATCCTGCTGGAGCAATTGTGCTGGCTCTCTACACAATCAGAACATGGTCAAGCACGGTTTTGGAAAATGTGAATTCGTTGGTTGGGAAAACAGCTTCACCTGATTATTTGCAGAAGTTGACATATCTCTGTTGGAATCATCACAAAGCAATTCTGCATATTGATACAGTGAGAGCTTACACATTTGGTTCTCATTATTTTGTTGAGGTAGACATTGTGCTACCCAGGGATATGCCTTTACACAAGGCTCATGACATTGGTGAAGCACTTCAGGAAAAACTGGAATCTCTTCCTGACATAGAACGGGCTTTTGTGCATTTAGATTATGAATATAGTCACAGACCTGAGCATGGGAAAAGCTACTCCTAACTCTGTATGTGAGTGTCATTTTATAATTGAAACTTCGTAATCTGCTTTTCAGGTCTTCTTTTATTCTTCCACTGGTATCATTCTCATCCTAGGATGTGATGGTAAAGTGATATTGTGGTAGTTGTAGATCTGCCATC

Fln Alignment:

Contig19904___SNQPSPLLEHGIEKAMPSEENAWRLNFNRFPRPERKETPK-----GCLIVSGPCSGDGVAKYYQQQGEMLDGFAEMDLVTDNCALPGMSKEDSDKLARSETIAIHLSNIANVVLFIAKVYASIKSGSLAIIASTXXXXXXXXXGFILWFTAFKMQSSNPYLYPIGKKRMQPLGILVFASVMATLGLQILLESIRQLVYKEDGLSLDGDKWHWVVGIMVSVTFVKLFLVLYCRSFTNEIVKAYAQDHFFDVITNTIGLIAAILASSTQYRWIDPAGAIVLALYTIRTWSSTVLENVNSLVGKTASPDYLQKLTYLCWNHHKAILHIDTVRAYTFGSHYFVEVDIVLPRDMPLHKAHDIGEALQEKLESLPDIERAFVHLDYEYSHRPEHGKSYS
A9NTR8_______________SEDGTEILLSSAEKAEPSEENAWRLSFNRISQFERDERSQQRGFHDCFSLLGPSSGDGVAEYYQQQEEMLEGFTEMDTVAERGYFPGLSKEERDRVARSETIAIRLSNIANIVLFIAKVYASIRSGSLAIIASTLDSLLDLLSGFILWFTAFKMQSPNPYLYPIGKKRMQPLGILVFASVMATLGLQILLECIRQLVYKEDGLSLDGDKWHWVVGIMVSVTLVKLFLVLYCRSFTNEIVKAFAQDHFFDVITNSIGLIAAILA-STLYWWIDPAGAIVLALYTIRTWSSTVLENVNSLVGKTASPDYLQKLTYLCWNHHKAIRHIDTVRAYTFGSHYFVEVDIVLPSDMPLQKAHDIGEALQEKLESLPDIERAFVHLDYEYSHRPEHGKSYS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain