SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene19756

Length: 380 nt

UniGene Fasta

>sp_v3.0_unigene19756
CGTCGTGACCTTGGCTGTCACTCAATTCCGGTGTTCTTCCACAATGACTCGGCGTATACACAGTACACGTGGCATCTTCCCTTAGACGGCAAGAAGAGCAACGAGGGGTACTCTGTGTTTATCCCGCACGACGACGTGGTGGTCAATATATCGATCGTGGAGCGAGTGCTTAGGCGTTTCAGGCCTGAGCAGGTGCGAGAGATGCAGGAGAACGTGATGAGTTTGATTTCGCATGTCATTTACACGATGAAGTCGACCACGAGCGATTCAAAGGCGGTGGGGTCGGTCCGAGATGCGTTCGACATCACCGTGGAGAGGGTGGTGGACTCGATTTCTCAACAGCAGAAGCGGGCCAAATATGAGGCAGAGACTAACACTGT

Ace file of the UniGene sp_v3.0_unigene19756

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycosyltransferase, CAZy family GT47 n=1 Tax=Populus trichocarpa RepID=B9GRC8_POPTR	-	-	2.0e-17	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G20370.1	KAM1, MUR3 Exostosin family protein chr2:8792355-8794214 FORWARD LENGTH=619	2.0e-21	47%
RefSeq	Arabidopsis thaliana	NP_179627.2	xyloglucan galactosyltransferase KATAMARI1 [Arabidopsis thaliana]	2.0e-21	47%
RefSeq	Populus trichocarpa	XP_002301846.1	glycosyltransferase, CAZy family GT47 [Populus trichocarpa]	4.0e-22	46%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NT31

Fln msg: STOP codon was not found. Distance to subject end: 7 aas, your sequence is shorter than subject: 126 - 155

Fln protein: RRDLGCHSIPVFFHNDSAYTQYTWHLPLDGKKSNEGYSVFIPHDDVVVNISIVERVLRRFRPEQVREMQENVMSLISHVIYTMKSTTSDSKAVGSVRDAFDITVERVVDSISQQQKRAKYEAETNT

Protein Length: 127

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCCGGTGTTCTTCCACAATGACTCGGCGTATACACAGTACACGTGGCATCTTCCCTTAGACGGCAAGAAGAGCAACGAGGGGTACTCTGTGTTTATCCCGCACGACGACGTGGTGGTCAATATATCGATCGTGGAGCGAGTGCTTAGGCGTTTCAGGCCTGAGCAGGTGCGAGAGATGCAGGAGAACGTGATGAGTTTGATTTCGCATGTCATTTACACGATGAAGTCGACCACGAGCGATTCAAAGGCGGTGGGGTCGGTCCGAGATGCGTTCGACATCACCGTGGAGAGGGTGGTGGACTCGATTTCTCAACAGCAGAAGCGGGCCAAATATGAGGCAGAGACTAACACTGT

Fln Alignment:

Contig19756___GCHSIPVFFHNDSAYTQYTWHLPLDGKKSNEGYSVFIPHDDVVVNISI--VERVLRRFRPEQVREMQENVMSLISHVIYTMKSTTSDSKAVGSVRDAFDITVERVVDSI
A9NT31_______________GC--IPVFFRRDSAYEQYTWHLPSD----PETYSVFIAEERMVNSRKALKIEDVLSSYSQEKIRKMREKIVEIMPSLLY-MNFAEKDGGEI-FPRDAFDLSIEGMLRKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain