SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene19627

Length: 2773 nt

UniGene Fasta

>sp_v3.0_unigene19627
ATGGGGATTGCATTGCTTTGCTGGTGTGATTTACAAATTTTCAGTACAGATCTCTAATGGCATCCCAAGTAGTCCATGGCCAACTCAATGCCACTATATTTGAAGCTAGGCACCTTGGTCATGGAGGCATACTCAATTTACTGGAAAAGGTGGAAGAGGAAGTTAAGGAGCTTCTGCATTTAGAAGGGCACAGAGGACCATATGCCACCATAGATATTGGCATTGCTACAATTGCAAGAACCAGAGTTCATTCCCATGAACCTCAGAACCCAATTTGGAACGAGAGTTTTCACATACACTGCGCGTATAAATCTTCTTATCTTGTGGTCAGCGTCAAGAAGGGATTGGAAATCTCTGCAGAAGTGATAGGAAGAGCCCAGATCCCAATCTCAGAAATCCTCACTGGTGACGTCATTGAGGGATGGTATGACTTGTATAACGAAGATTTCTCTGAGAAGTTGAAGAAAGCCCAGATCCATGTCCGCCTTCAGTTCAAACACGTCACAAAAGATCCGTATTGGGGTTCTGGGATTCGAGATGGGGACTTCCCTGGAGTCCAGCATGTGTATTTCAAACAGAGGAAAGGATGCAGAGTCAAAACTGTATCAGAACTCGCACTTATCAGAACACTTTCGTCCCAGGATAGAGCTGGGTCACGGGGAGGAGAGAGGCTTTTACAAGCCTCCGAGACTCTGGGAGGAATTGTACGAGTACTTGGATGGAGCCAAGCATTTTATATACATTGCTGGGTGGTCTGTAAACACCCAGATTACCCTAGTAAGGGACAGGGAAAGAATGATCCCTGGTGCAGAAGGTGTGACTTTGGGTGAGCTTCTGAAGAAAAAAGCGGAGCAGGGGGTTAGAGTTTTGGTCCTCATCTGGGAGGACAGGACGGCCGTGGAATTTCTCCGCAATCAGGGACTCATGAAAACCCACTGCGACGAGACATTCGATTATTTCAAGGGCACCAACGTTTATTGCTTTCTGTGTCCCAGACTTGCAGACCATTCGTTGAGTCCAGTCCAGAGTGTGGAAATTGCAGCCGAGTTTACCCATCATCAGAAGACCGTTAGCCTGGACGCCAGCATTCAAGGCTCTGAAAATCGCCAGGTTGTGAGCTTCGTGGGAGGAATCGATTTGTGTGACGGGAGGTATGATAATGAGATCCATCCGCTGTTTAGATCTCTGAATACTGTTTACAGGGATGATTTTCATCAGAACAATTACAAGGACGCGGATCTTGGCCATGGCGGTCCCAGGGAGCCATGGCACGATGCCCATTCTAAAATCCAAGGCCCGGCTGCCTACGATGTTGTGACGAACTTTATTCAGCGCTGGACAAAGCAGGCCGATCCGAGCCTCCTCCTAAAACTCGAGGATTTACCGGGTCTCCTACCGCCGGACGCACATTTTGAAGGCCGGGAGTCTTGGAATGTTCAGATCTTCCGGTCCATAGACGATTCTTCCGTGGTGGGGTTCCCTGTGAATCCGTCCGATGCGTCGGAGCTGGGGCTTGTGACCGTGAAGGACCAGGTTATCGACAAGAGCATCCAGTGCGCCTATATCGAAGCCATCCGGCGAGCCAGGGACTTCATTTACATAGAGAATCAGTATTTCTTTGGCAGTTGTGCTTCGTGGGACCGCGACCAGGATTGCGGGTGCCTGCATCTCATTCCGATTGAGATTGCGCTGAAGGTGGTTAGCAAGATCAGGGCCCGGGAGCGGTTCTCTGTGTATGTGGTGACTCCGATGTGGCCGGAGGGGATACCCGAGGGGGGTACTGTGCAGGCCATCCTGCATTGGTTCAGGAACACTGTGCGCATGATGTATAAGATGATTGGGGAGGCGCTCAGGGAGGAGGGCCTGGACCATGAGTTCAGGCCAACTGATTATTTGAATTTCTTCTGCGTGGGGAACAGGGAGGTGAAGCTACCAAGCGATTATGTACCTCCTGAAAGGCCAGAAGAGGGAACCAGTTACTGGAATGCCCAAAAACACAGGAGAGCCATGATCTATGTGCATGCCAAGCTCATGATAGTGGACGATGAATATATTATCATAGGATCGGCCAATCTGAACCAGAGATCCATGGACGGAGCCAGGGACTCCGAAATAGCCCAAGGATGTTACCAGCCATACCACATCAACCAGCGGGGCCGGAGAGCTAGAGGGGAGATATTTGGATATCGAATGTCTCTGTGGTACGAGCATTTTGCACATAAGAATGGCGGCCTGCGGCGTGAATATCTTCATCCAGAGAGTGTTGAATGCGTGAGGCTGGTACGCAGGATATGCGAGCGAACTTGGGACTCTTTTGTTCAAGAAGAGACTGTGGAGGATCTGCCCGGGCATCTTATGCTATTCCCAATGCGGGTGCTGAAGGATGGGACATTGGATGCAGAGGTGGGTATTGTGTACCCTGATACCAAGGCTTCTGTGAAAGGCCACAAGGTTGATGTTCTTCCTCCCATACTCACAACCTGAGCACGATGGCCTTCTCAGATCCTTCCGGGGCTACCAGAAATATTAATAATTGTAGGATGTTATTGTATGTTTGATAACCAATTACCGGAGATGTTGATGTTATCATATGTCGAAAAGCTATCTGAGCACGTTGGCCTTCTCAGCTCCTTCCAGGGCTACCCGAAATATCAATAATTCTAGGATGTTAGTGCATGTTTTGATAACCAATTACCGGAGATGTTGATGTTATCGTATGTAATTAAGTTTTTCATTATTACGATTAATAAATAGGTTTAAAATAGTTAGTTCC

Ace file of the UniGene sp_v3.0_unigene19627

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phospholipase D n=2 Tax=Vitis vinifera RepID=Q09VU3_VITVI	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Phospholipase D	-	-	4.365e-33	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipase D.	EC:3.1.4.4	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Glycerophospholipid metabolism	00564	%
Sma3	Ether lipid metabolism	00565	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	A_IG005I10.13; At1g52570; At1g55180; At2g42010; At3g15730; At4g00240; At4g11830; At4g11840; At4g11850; At4g35790; At5g25370; F18G18.110; F4B14.60; F5I10.13; F6D8.21; F7A10.25; GSVIVT00000347001; GSVIVT00001073001; GSVIVT00007835001; GSVIVT00012363001; GSV

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	clathrin-coated vesicle	GO:0030136	Cellular Component	-
Sma3	cytoplasmic vesicle	GO:0031410	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	phospholipase D activity	GO:0004630	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	NAPE-specific phospholipase D activity	GO:0070290	Molecular Function	-
Sma3	fatty acid metabolic process	GO:0006631	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	phospholipid catabolic process	GO:0009395	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	positive regulation of abscisic acid mediated signaling pathway	GO:0009789	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	-
Sma3	seed germination	GO:0009845	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-
Sma3	programmed cell death	GO:0012501	Biological Process	-
Sma3	lipid catabolic process	GO:0016042	Biological Process	-
Sma3	membrane lipid catabolic process	GO:0046466	Biological Process	-
Sma3	phosphatidylcholine metabolic process	GO:0046470	Biological Process	-
Sma3	phosphatidic acid metabolic process	GO:0046473	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Phospholipase D/Transphosphatidylase	IPR001736	-	-
Sma3	YLP motif	IPR004019	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	Phospholipase D, plant	IPR011402	-	-
Sma3	Phospholipase D	IPR015679	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G15730.1	PLDALPHA1, PLD phospholipase D alpha 1 chr3:5330835-5333474 FORWARD LENGTH=810	54%
RefSeq	Arabidopsis thaliana	NP_188194.1	phospholipase D alpha 1 [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002327529.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV59

Fln msg: your sequence is longer than subject: 669 - 482

Fln protein: MSAFSSNTSQKIRIGVLGFEMGTSLESSMCISNRGKDAESKLYQNSHLSEHFRPRIELGHGEERGFYKPPRLWEELYEYLDGAKHFIYIAGWSVNTQITLVRDRERMIPGAEGVTLGELLKKKAEQGVRVLVLIWEDRTAVEFLRNQGLMKTHCDETFDYFKGTNVYCFLCPRLADHSLSPVQSVEIAAEFTHHQKTVSLDASIQGSENRQVVSFVGGIDLCDGRYDNEIHPLFRSLNTVYRDDFHQNNYKDADLGHGGPREPWHDAHSKIQGPAAYDVVTNFIQRWTKQADPSLLLKLEDLPGLLPPDAHFEGRESWNVQIFRSIDDSSVVGFPVNPSDASELGLVTVKDQVIDKSIQCAYIEAIRRARDFIYIENQYFFGSCASWDRDQDCGCLHLIPIEIALKVVSKIRARERFSVYVVTPMWPEGIPEGGTVQAILHWFRNTVRMMYKMIGEALREEGLDHEFRPTDYLNFFCVGNREVKLPSDYVPPERPEEGTSYWNAQKHRRAMIYVHAKLMIVDDEYIIIGSANLNQRSMDGARDSEIAQGCYQPYHINQRGRRARGEIFGYRMSLWYEHFAHKNGGLRREYLHPESVECVRLVRRICERTWDSFVQEETVEDLPGHLMLFPMRVLKDGTLDAEVGIVYPDTKASVKGHKVDVLPPILTT*

Protein Length: 670

Fln nts: ATGGGGATTGCATTGCTTTGCTGGTGTGATTTACAAATTTTCAGTACAGATCTCTAATGGCATCCCAAGTAGTCCATGGCCAACTCAATGCCACTATATTTGAAGCTAGGCACCTTGGTCATGGAGGCATACTCAATTTACTGGAAAAGGTGGAAGAGGAAGTTAAGGAGCTTCTGCATTTAGAAGGGCACAGAGGACCATATGCCACCATAGATATTGGCATTGCTACAATTGCAAGAACCAGAGTTCATTCCCATGAACCTCAGAACCCAATTTGGAACGAGAGTTTTCACATACACTGCGCGTATAAATCTTCTTATCTTGTGGTCAGCGTCAAGAAGGGATTGGAAATCTCTGCAGAAGTGATAGGAAGAGCCCAGATCCCAATCTCAGAAATCCTCACTGGTGACGTCATTGAGGGATGGTATGACTTGTATAACGAAGATTTCTCTGAGAAGTTGAAGAAAGCCCAGATCC_-_ATGTCCGCCTTCAGTTCAAACACGTCACAAAAGATCCGTATTGGGGTTCTGGGATTCGAGATGGGGACTTCCCTGGAGTCCAGCATGTGTATTTCAAACAGAGGAAAGGATGCAGAGTCAAAACTGTATCAGAACTCGCACTTATCAGAACACTTTCGTCCCAGGATAGAGCTGGGTCACGGGGAGGAGAGAGGCTTTTACAAGCCTCCGAGACTCTGGGAGGAATTGTACGAGTACTTGGATGGAGCCAAGCATTTTATATACATTGCTGGGTGGTCTGTAAACACCCAGATTACCCTAGTAAGGGACAGGGAAAGAATGATCCCTGGTGCAGAAGGTGTGACTTTGGGTGAGCTTCTGAAGAAAAAAGCGGAGCAGGGGGTTAGAGTTTTGGTCCTCATCTGGGAGGACAGGACGGCCGTGGAATTTCTCCGCAATCAGGGACTCATGAAAACCCACTGCGACGAGACATTCGATTATTTCAAGGGCACCAACGTTTATTGCTTTCTGTGTCCCAGACTTGCAGACCATTCGTTGAGTCCAGTCCAGAGTGTGGAAATTGCAGCCGAGTTTACCCATCATCAGAAGACCGTTAGCCTGGACGCCAGCATTCAAGGCTCTGAAAATCGCCAGGTTGTGAGCTTCGTGGGAGGAATCGATTTGTGTGACGGGAGGTATGATAATGAGATCCATCCGCTGTTTAGATCTCTGAATACTGTTTACAGGGATGATTTTCATCAGAACAATTACAAGGACGCGGATCTTGGCCATGGCGGTCCCAGGGAGCCATGGCACGATGCCCATTCTAAAATCCAAGGCCCGGCTGCCTACGATGTTGTGACGAACTTTATTCAGCGCTGGACAAAGCAGGCCGATCCGAGCCTCCTCCTAAAACTCGAGGATTTACCGGGTCTCCTACCGCCGGACGCACATTTTGAAGGCCGGGAGTCTTGGAATGTTCAGATCTTCCGGTCCATAGACGATTCTTCCGTGGTGGGGTTCCCTGTGAATCCGTCCGATGCGTCGGAGCTGGGGCTTGTGACCGTGAAGGACCAGGTTATCGACAAGAGCATCCAGTGCGCCTATATCGAAGCCATCCGGCGAGCCAGGGACTTCATTTACATAGAGAATCAGTATTTCTTTGGCAGTTGTGCTTCGTGGGACCGCGACCAGGATTGCGGGTGCCTGCATCTCATTCCGATTGAGATTGCGCTGAAGGTGGTTAGCAAGATCAGGGCCCGGGAGCGGTTCTCTGTGTATGTGGTGACTCCGATGTGGCCGGAGGGGATACCCGAGGGGGGTACTGTGCAGGCCATCCTGCATTGGTTCAGGAACACTGTGCGCATGATGTATAAGATGATTGGGGAGGCGCTCAGGGAGGAGGGCCTGGACCATGAGTTCAGGCCAACTGATTATTTGAATTTCTTCTGCGTGGGGAACAGGGAGGTGAAGCTACCAAGCGATTATGTACCTCCTGAAAGGCCAGAAGAGGGAACCAGTTACTGGAATGCCCAAAAACACAGGAGAGCCATGATCTATGTGCATGCCAAGCTCATGATAGTGGACGATGAATATATTATCATAGGATCGGCCAATCTGAACCAGAGATCCATGGACGGAGCCAGGGACTCCGAAATAGCCCAAGGATGTTACCAGCCATACCACATCAACCAGCGGGGCCGGAGAGCTAGAGGGGAGATATTTGGATATCGAATGTCTCTGTGGTACGAGCATTTTGCACATAAGAATGGCGGCCTGCGGCGTGAATATCTTCATCCAGAGAGTGTTGAATGCGTGAGGCTGGTACGCAGGATATGCGAGCGAACTTGGGACTCTTTTGTTCAAGAAGAGACTGTGGAGGATCTGCCCGGGCATCTTATGCTATTCCCAATGCGGGTGCTGAAGGATGGGACATTGGATGCAGAGGTGGGTATTGTGTACCCTGATACCAAGGCTTCTGTGAAAGGCCACAAGGTTGATGTTCTTCCTCCCATACTCACAACCTGA___GCACGATGGCCTTCTCAGATCCTTCCGGGGCTACCAGAAATATTAATAATTGTAGGATGTTATTGTATGTTTGATAACCAATTACCGGAGATGTTGATGTTATCATATGTCGAAAAGCTATCTGAGCACGTTGGCCTTCTCAGCTCCTTCCAGGGCTACCCGAAATATCAATAATTCTAGGATGTTAGTGCATGTTTTGATAACCAATTACCGGAGATGTTGATGTTATCGTATGTAATTAAGTTTTTCATTATTACGATTAATAAATAGGTTTAAAATAGTTAGTTCC

Fln Alignment:

Contig19627___FTHHQKTVSLDASIQG--SENRQVVSFVGGIDLCDGRYDNEIHPLFRSLNTVYRDDFHQNNYKDADLGHGGPREPWHDAHSKIQGPAAYDVVTNFIQRWTKQAXXXXXXXXXXXXXXXXXXA--HFEGRESWNVQIFRSIDDSSVVGFPVNPSDASELGLVTVKDQVIDKSIQCAYIEAIRRARDFIYIENQYFFGSCASWDRD----QDCGCLHLIPIEIALKVVSKIRARERFSVYVVTPMWPEGIPEGGTVQAILHWFRNTVRMMYKMIGEALREEGLDHEFRPTDYLNFFCVGNREVKLPSDYVPPERPEEGTSYWNAQKHRRAMIYVHAKLMIVDDEYIIIGSANLNQRSMDGARDSEIAQGCYQPYHINQRGRRARGEIFGYRMSLWYEHFAHKNGGLRREYLHPESVECVRLVRRICERTWDSFVQEETVEDLPGHLMLFPMRVLKDGTLDAEVGI-VYPDTKASVKGHKVDVLPPILTT
A9NV59_______________FTHHQKIVVVDSPLPGGGSEQRRIVSFVGGIDLCDGRYDTQFHSLFRTLDSVHHDDFHQPNFPGGAIDKGGPREPWHDIHSKLEGPVAWDVLYNFEQRWRKQGQKDLLLPLRQFSEISPPSAVTYEDDQETWNVQVFRSIDGGAAFGFPETPEDAARSGLVSGKDNIIDRSIQDAYINAIRRAKDFIYIENQYFLGSSYGWKPDDIKGQDIGALHLIPKELSLKIVSKIEAGEQFRVYVVVPMWPEGVPESASVQAILDWQRRTMEMMYTDIAQALRAKQI-YDADPRDYLTFFCLANREVKKNGEYMPQVEPEEDSDYKRAQQNRRFMIYVHAKMMIVDDEYILIGSANINQRSMDGARDSEIAMGAYQPFHL-AVNEPARGQIHGFRMSLWYEH----TGMLDNLFLQPENVQCIRKVNKIAERYWDLYSSESLERDLPGHLLMYPVGITNEGEVTELPGSEFFPDTKARIFGTKSDLLPPILTT

SNPs (tot: 65)

Position	A %	C %	G %	T %	Probability
128			33	66	1.0
136	66		33		0.997452
200		33		66	1.0
204		33		66	0.997452
260	80		20		0.995493
263	20	80			0.995493
266	80		20		0.995493
283	20		80		0.995493
291		20		80	0.995493
315		20		80	0.995493
319		20		80	0.995493
322		80	20		0.995493
324			20	80	0.995493
336		60		40	1.0
366	25		75		0.996473
368		25		75	0.996473
387	75		25		0.996473
393	75		25		0.996473
405		25		75	0.996473
464	66		33		0.997452
483		66		33	0.997452
501		66		33	0.997452
505	33			66	0.997452
508	33		66		0.997452
516	33		66		0.997452
544			66	33	0.997452
546	33		66		0.997452
560		66		33	0.997452
563	33		66		0.997452
2170	66	33			0.997452
2175	33		66		0.997452
2239	50	50			1.0
2243	50		50		1.0
2264	50		50		1.0
2292			88	11	0.923564
2307			11	88	0.999952
2309		11	88		0.999952
2318			12	87	0.999964
2321		12		87	0.999964
2323		87	12		0.999964
2324	87			12	0.999964
2325	87	12			0.999964
2388		33		66	1.0
2392	66			33	1.0
2397	33		66		1.0
2402	33	66			1.0
2443	71		28		1.0
2460		46		53	1.0
2461	38	30	30		1.0
2478		69	30		1.0
2493	50			50	1.0
2513		70	30		1.0
2514	42		57		1.0
2546			70	30	1.0
2585		27		72	1.0
2592	90		10		0.90298
2595			20	80	0.999996
2599	42		57		1.0
2606		16		83	0.994512
2609		83	16		0.994512
2664		50	50		1.0
2675			50	50	1.0
2681			50	50	1.0
2727		25		75	0.996473
2757	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain