SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene19609

Length: 3553 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene19609
GATGACTTTCCAAGGTTAATTCGAGAAAACTTCTGGAACAGGGTTTCGATTCGCTACCTGTTTAGTGTCCAAGTATTTCCTCAATCCACGGCATCTTATTCTGCCCCTCACAGAATATTCGATCACCGTCCTGCTCCACCAAAAACCCTAACGGAGTTACGGTCTTCAACCAAAAGCCTACTCCATCGAGCAAAGTCATCCTTTTGTTTGTCTCAGGCCGCCGGGTCATTCTTTTATCTTAGTACTCGCATGCCTTGCCTGAGCCGCGAGAGTCCGTGATTTGAAGGTTTCAGAGGTCTGCAACTCGAATCCATTCTGTGCCGTTCTCCTTTGGCGGGTGCTCATTGGTATTCTTCTGTTTTGGCTGAGAAGAGTTTTGGTGAATACAAAAGTTAGGAAAAATGGTGAAGTTCACGGCTGAAGAGCTTCGTAAAATCATGGACAGGAAGCATAACATACGAAACATGTCTGTTATTGCCCATGTTGATCACGGAAAATCCACTCTCACTGATTCTTTGGTAGCAGCAGCTGGTATCATTGCTCAAGAAGTTGCTGGAGATGTCAGAATGACTGATACTCGGGCAGATGAAGCTGAACGTGGCATCACCATCAAGTCAACTGGAATTTCGTTGTACTATGTGATGGAGGATTCAGCGGTGAAAAATTTCAAGGGGGATAGAGAAGGACACGAATATTTGATAAATCTGATTGATTCTCCAGGGCATGTTGACTTTTCTTCAGAAGTTACAGCAGCCCTGCGAATCACAGATGGTGCACTGGTTGTGGTAGATTGTATTGAAGGGGTTTGTGTCCAGACTGAGACTGTTCTTCGTCAAGCTCTTGGAGAAAGGATTAGGCCTGTTCTCACTGTGAACAAGATGGACAGGTGCTTTCTTGAGTTGCAGGTTGATGGAGAGGAAGCTTACCAAACCTTCTCACGTGTCATTGAAAATGCAAATGTGATTATGGCTACTTATGAAGATCCTCTTCTTGGTGACTGCCAAGTTTATCCTGAAAAAGGTACAGTTGCATTCTCGGCAGGTCTGCACGGGTGGGCATTTACCCTCACAAATTTTGCAAAAATGTATGCTTCAAAGTTTGGAGTGGATGAAGCAAAGATGATGGAGAGGCTCTGGGGTGAGAACTTTTTTGATCCAGCTACAAAGAAATGGACAACCAAGAATACAGGTTCTGCAACTTGCAAAAGAGGATTTGTTCAATTCATATATGAACCTATTAAGCAAATTATCAATATTTGTATGAATGATCAAAAGGATAAGTTGTGGCCCATGTTGCAGAAATTGGGAGTTGTAATGAAAAGTGACGAGAAGGAGCTGGTTGCAAAAGCACTCATGAAGCGTGTCATGCAAACCTGGCTACCTGCAAGTAGTGCTTTACTTGAAATGATGATTTTCCATCTTCCTTCTCCAGCGAAGGCACAGAGATATCGTGTGGAAAACTTGTATGAAGGACCTCTTGATGATGTATATGCAACTGCAATAAGAAACTGTGACCCTGAGGGTCCACTGATGTTGTATGTTTCAAAAATGATTCCAGCTTCGGACAAAGGACGTTTCTTTGCCTTTGGTCGTGTTTTTGCTGGCAGAGTTGCAACAGGTATGAAGGTAAGGATCATGGGTCCCAACTATGTGCCAGGTCAGAAGAAAGATTTATATACAAAGAGTGTTCAAAGGACTGTGATATGGATGGGAAAGAGACAAGAATCTGTTGAGGATGTGCCTTGTGGAAATACAGTGGCTTTGGTTGGGTTAGACCAGTTCATAACCAAAAATGCTACACTGACAAACGAGAAGGAGGCTGATGCTCATCCGATCAGAGCAATGAAGTTCTCTGTGTCCCCTGTTGTACGTGTTGCTGTGCAGTGCAAGGTGGCATCTGACCTTCCAAAACTTGTTGAAGGGCTGAAGCGTCTTGCTAAGTCGGATCCTATGGTTGTTTGTACAATTGAGGAATCTGGAGAACATATTATTGCAGGTGCAGGAGAGCTTCATCTCGAGATTTGCTTAAAAGATCTCCAAGATGATTTTATGGGTGGAGCTGAGATTGTTGTTTCTGATCCTGTTGTCTCATTTAGAGAAACTGTTTTGGAGAAATCATGCCGTACTGTTATGAGCAAGTCTCCAAATAAACATAACAGGCTTTACTTTGAAGCAAGACCTTTAGAAGAAGGTCTTGCAGAAGCAATTGATGAAGGTCGTATTGGCCCGAAGGATGATCCAAAGGCTCGCTCAAAAATTCTTTCTGAGGAATTTGGATGGGACAAAGATTTGGCTAAGAAGATCTGGTGTTTTGGACCTGAAACCACTGGTCCCAATATGGTGGTGGATATGTGTAAGGGAGTTCAATACTTGAATGAAATTAAAGATTCTGTGGTTGCTGCATTCCAATGGGCATCTAAGGAAGGTGCTCTTGCAGAAGAAAATATGCGTGGTATTTGCTTTGAGGTTTGTGACGTGGTTTTGCACACTGATGCTATCCATAGAGGAGGTGGCCAGGTTATCCCAACGGCCAGAAGGGTTATGTATGCATCTCAGCTTACTGCCAAACCACGGCTTCTTGAGCCAGTATATCTCGTTGAGATTCAGGCTCCTGAGAATGCCCTTGGTGGTATTTATGGTGTGCTGAACCAGAAGAGAGGTCATGTTTTTGAAGAAATGCAGAGGCCAGGTACTCCACTATACAACATCAAGGCATATCTGCCGGTTGTTGAATCATTCGGATTCTCAAGCACTCTCCGCGCTGCAACTTCCGGCCAGGCTTTTCCTCAATGTGTGTTTGACCACTGGGATATGATGGGCTCTGATCCATTGGAATCTGGGTCACAAGCTGGTCAGCTTGTGATCGATATACGTAAGAGGAAGGGTCTTAAGGAGAGTATGACTCCCTTGTCAGAGTACGAAGACAAGCTGTAGAGCTTTGTTATGTTTGCCTGCCGGATGCTGTCAATATTGAGGATAGTATTTTTATTTATAGTAGGATCAGAAATCATTAAAGCTGCCATTTCTTTTCGCTACCTATTGAATCTCAAAGGGAGACCCGACTTCCCAGGCTTCACTAAGTATGAAAAGGCAATTGTTTCAACCATCTTGTAGGCAGGACTTCAAAATTCAAACTGAGTATGAAAAGGCAATTGTTTGAGCCATCTTGCTGTCAGGACATTAAAATTCAGCGAATAAATTGAAGTTGCCCATAGATTGTTTAATAGATCCAAAATGTTTAGTTCAAATTTTTAATTGATACTTGCGAGGCTGTTGAGTGCTTGATCTGGCCTGCCTTTTAATCATTGTACTTTCTATTTCATTTTTTGCACCGTACGATTAAGCTCCATGGATCAATTGATTGCTGTATTGAGAATCGAAGGGTAATGCCATTTCAAGAATCCCATCGAATCTTCTCTCTGACATCGTTTGTCTCTTTGAATGTAAATCCTATTTGTCCTGACCACATCTGAATATTTTTTATATTATGACATGTGATTCATAACCCTTCATGTTATGTTTGAACCATAATTGAATCATCCTCCAAACCTCTG

Ace file of the UniGene sp_v3.0_unigene19609 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Elongation factor 2 n=32 Tax=Magnoliophyta RepID=EF2_BETVU	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Eukaryotic translation elongation factor, putative	-	-	-

Source	Gene names
Sma3	RCOM_1068970;

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	Translation elongation factor EFG/EF2, C-terminal	IPR000640	-	-
Sma3	Translation elongation factor EFG/EF2, domain IV	IPR005517	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G56070.1	LOS1 Ribosomal protein S5/Elongation factor G/III/V family protein chr1:20968245-20971077 REVERSE LENGTH=843	91%
RefSeq	Arabidopsis thaliana	NP_849818.1	elongation factor EF-2 [Arabidopsis thaliana]	91%
RefSeq	Populus trichocarpa	XP_002306416.1	predicted protein [Populus trichocarpa]	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACX5

Fln msg: your sequence is longer than subject: 844 - 267

Fln protein: MVKFTAEELRKIMDRKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYVMEDSAVKNFKGDREGHEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDCQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDEAKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFIYEPIKQIINICMNDQKDKLWPMLQKLGVVMKSDEKELVAKALMKRVMQTWLPASSALLEMMIFHLPSPAKAQRYRVENLYEGPLDDVYATAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFAGRVATGMKVRIMGPNYVPGQKKDLYTKSVQRTVIWMGKRQESVEDVPCGNTVALVGLDQFITKNATLTNEKEADAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIVVSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYFEARPLEEGLAEAIDEGRIGPKDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAAFQWASKEGALAEENMRGICFEVCDVVLHTDAIHRGGGQVIPTARRVMYASQLTAKPRLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMGSDPLESGSQAGQLVIDIRKRKGLKESMTPLSEYEDKL*

Protein Length: 845

Fln nts: GATGACTTTCCAAGGTTAATTCGAGAAAACTTCTGGAACAGGGTTTCGATTCGCTACCTGTTTAGTGTCCAAGTATTTCCTCAATCCACGGCATCTTATTCTGCCCCTCACAGAATATTCGATCACCGTCCTGCTCCACCAAAAACCCTAACGGAGTTACGGTCTTCAACCAAAAGCCTACTCCATCGAGCAAAGTCATCCTTTTGTTTGTCTCAGGCCGCCGGGTCATTCTTTTATCTTAGTACTCGCATGCCTTGCCTGAGCCGCGAGAGTCCGTGATTTGAAGGTTTCAGAGGTCTGCAACTCGAATCCATTCTGTGCCGTTCTCCTTTGGCGGGTGCTCATTGGTATTCTTCTGTTTTGGCTGAGAAGAGTTTTGGTGAATACAAAAGTTAGGAAAA_-_ATGGTGAAGTTCACGGCTGAAGAGCTTCGTAAAATCATGGACAGGAAGCATAACATACGAAACATGTCTGTTATTGCCCATGTTGATCACGGAAAATCCACTCTCACTGATTCTTTGGTAGCAGCAGCTGGTATCATTGCTCAAGAAGTTGCTGGAGATGTCAGAATGACTGATACTCGGGCAGATGAAGCTGAACGTGGCATCACCATCAAGTCAACTGGAATTTCGTTGTACTATGTGATGGAGGATTCAGCGGTGAAAAATTTCAAGGGGGATAGAGAAGGACACGAATATTTGATAAATCTGATTGATTCTCCAGGGCATGTTGACTTTTCTTCAGAAGTTACAGCAGCCCTGCGAATCACAGATGGTGCACTGGTTGTGGTAGATTGTATTGAAGGGGTTTGTGTCCAGACTGAGACTGTTCTTCGTCAAGCTCTTGGAGAAAGGATTAGGCCTGTTCTCACTGTGAACAAGATGGACAGGTGCTTTCTTGAGTTGCAGGTTGATGGAGAGGAAGCTTACCAAACCTTCTCACGTGTCATTGAAAATGCAAATGTGATTATGGCTACTTATGAAGATCCTCTTCTTGGTGACTGCCAAGTTTATCCTGAAAAAGGTACAGTTGCATTCTCGGCAGGTCTGCACGGGTGGGCATTTACCCTCACAAATTTTGCAAAAATGTATGCTTCAAAGTTTGGAGTGGATGAAGCAAAGATGATGGAGAGGCTCTGGGGTGAGAACTTTTTTGATCCAGCTACAAAGAAATGGACAACCAAGAATACAGGTTCTGCAACTTGCAAAAGAGGATTTGTTCAATTCATATATGAACCTATTAAGCAAATTATCAATATTTGTATGAATGATCAAAAGGATAAGTTGTGGCCCATGTTGCAGAAATTGGGAGTTGTAATGAAAAGTGACGAGAAGGAGCTGGTTGCAAAAGCACTCATGAAGCGTGTCATGCAAACCTGGCTACCTGCAAGTAGTGCTTTACTTGAAATGATGATTTTCCATCTTCCTTCTCCAGCGAAGGCACAGAGATATCGTGTGGAAAACTTGTATGAAGGACCTCTTGATGATGTATATGCAACTGCAATAAGAAACTGTGACCCTGAGGGTCCACTGATGTTGTATGTTTCAAAAATGATTCCAGCTTCGGACAAAGGACGTTTCTTTGCCTTTGGTCGTGTTTTTGCTGGCAGAGTTGCAACAGGTATGAAGGTAAGGATCATGGGTCCCAACTATGTGCCAGGTCAGAAGAAAGATTTATATACAAAGAGTGTTCAAAGGACTGTGATATGGATGGGAAAGAGACAAGAATCTGTTGAGGATGTGCCTTGTGGAAATACAGTGGCTTTGGTTGGGTTAGACCAGTTCATAACCAAAAATGCTACACTGACAAACGAGAAGGAGGCTGATGCTCATCCGATCAGAGCAATGAAGTTCTCTGTGTCCCCTGTTGTACGTGTTGCTGTGCAGTGCAAGGTGGCATCTGACCTTCCAAAACTTGTTGAAGGGCTGAAGCGTCTTGCTAAGTCGGATCCTATGGTTGTTTGTACAATTGAGGAATCTGGAGAACATATTATTGCAGGTGCAGGAGAGCTTCATCTCGAGATTTGCTTAAAAGATCTCCAAGATGATTTTATGGGTGGAGCTGAGATTGTTGTTTCTGATCCTGTTGTCTCATTTAGAGAAACTGTTTTGGAGAAATCATGCCGTACTGTTATGAGCAAGTCTCCAAATAAACATAACAGGCTTTACTTTGAAGCAAGACCTTTAGAAGAAGGTCTTGCAGAAGCAATTGATGAAGGTCGTATTGGCCCGAAGGATGATCCAAAGGCTCGCTCAAAAATTCTTTCTGAGGAATTTGGATGGGACAAAGATTTGGCTAAGAAGATCTGGTGTTTTGGACCTGAAACCACTGGTCCCAATATGGTGGTGGATATGTGTAAGGGAGTTCAATACTTGAATGAAATTAAAGATTCTGTGGTTGCTGCATTCCAATGGGCATCTAAGGAAGGTGCTCTTGCAGAAGAAAATATGCGTGGTATTTGCTTTGAGGTTTGTGACGTGGTTTTGCACACTGATGCTATCCATAGAGGAGGTGGCCAGGTTATCCCAACGGCCAGAAGGGTTATGTATGCATCTCAGCTTACTGCCAAACCACGGCTTCTTGAGCCAGTATATCTCGTTGAGATTCAGGCTCCTGAGAATGCCCTTGGTGGTATTTATGGTGTGCTGAACCAGAAGAGAGGTCATGTTTTTGAAGAAATGCAGAGGCCAGGTACTCCACTATACAACATCAAGGCATATCTGCCGGTTGTTGAATCATTCGGATTCTCAAGCACTCTCCGCGCTGCAACTTCCGGCCAGGCTTTTCCTCAATGTGTGTTTGACCACTGGGATATGATGGGCTCTGATCCATTGGAATCTGGGTCACAAGCTGGTCAGCTTGTGATCGATATACGTAAGAGGAAGGGTCTTAAGGAGAGTATGACTCCCTTGTCAGAGTACGAAGACAAGCTGTAG___AGCTTTGTTATGTTTGCCTGCCGGATGCTGTCAATATTGAGGATAGTATTTTTATTTATAGTAGGATCAGAAATCATTAAAGCTGCCATTTCTTTTCGCTACCTATTGAATCTCAAAGGGAGACCCGACTTCCCAGGCTTCACTAAGTATGAAAAGGCAATTGTTTCAACCATCTTGTAGGCAGGACTTCAAAATTCAAACTGAGTATGAAAAGGCAATTGTTTGAGCCATCTTGCTGTCAGGACATTAAAATTCAGCGAATAAATTGAAGTTGCCCATAGATTGTTTAATAGATCCAAAATGTTTAGTTCAAATTTTTAATTGATACTTGCGAGGCTGTTGAGTGCTTGATCTGGCCTGCCTTTTAATCATTGTACTTTCTATTTCATTTTTTGCACCGTACGATTAAGCTCCATGGATCAATTGATTGCTGTATTGAGAATCGAAGGGTAATGCCATTTCAAGAATCCCATCGAATCTTCTCTCTGACATCGTTTGTCTCTTTGAATGTAAATCCTATTTGTCCTGACCACATCTGAATATTTTTTATATTATGACATGTGATTCATAACCCTTCATGTTATGTTTGAACCATAATTGAATCATCCTCCAAACCTCTG

Fln Alignment:

Contig19609___MSKSPNKHNRLYFEARPLEEGLAEAIDEGRIGPKDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAAFQWASKEGALAEENMRGICFEVCDVVLHTDAIHRGGGQVIPTARRVMYASQLTAKPRLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMGSDPLESGSQAGQLVIDIRKRKGLKESMTPLSEYEDKL
D5ACX5_______________MSKSPNKHNRLYFEARPLEEGLAEAIDDGRIGPKDDPKARAKILSEEFGWDKDLAKKIWCFGPETTGPNLVVDMCKGVQYLNEIKDSVVAAFQWASKEGALAEENMRGICFEVCDVVLHTDAIHRGGGQIIPTARRVMYASQLTAKPRLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRQGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMGSDPLETGSQAGQLVTDIRKRKGLKESMTPLSDFEDKL

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
1485	90	9			0.999842
1486	90	9			0.999842
1735	90	2	7		0.999998
1762	25			30	1.0
1763	70			30	1.0
1768			14	85	0.999981
1769			85	14	0.999981
1770			14	85	0.999981
1838		60		40	1.0
1871	20	80			0.995493
1873		80	20		0.995493
1951		20	80		0.995493
2493		33		66	0.997452
2506	33		66		0.997452
2641		20		80	0.995493
2686	80		20		0.995493
2830	75		25		0.996473
2866	25		75		0.996473
2899	33	66			0.997452
2904	66	33			0.997452
2915	66			33	0.997452
2926		66		33	0.997452
2944	33		66		0.997452
3264			66	33	0.997452
3265	66		33		0.997452
3288		6	93		0.999264
3290	3	6	89		0.998304
3291		13	82		1.0
3293		6	3	86	0.995852
3296		3	85	10	1.0
3346	77	11	11		0.968132
3347	87	12			0.992554
3348	87	12			0.992554
3351	85			14	0.993533
3369	80		20		0.995493
3408		25	75		0.996473
3409		25	75		0.996473
3410		25		75	0.996473
3411	25			75	0.996473
3414			33	66	0.997452
3451		25	75		0.996473
3452		25	75		0.996473
3453		25	75		0.996473
3456			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain