SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene19491

Length: 2079 nt

UniGene Fasta

>sp_v3.0_unigene19491
CGTCGTGACCTTGGCTGTCACTCAATGTTTGATTATCTTTTTCCTACATAATCGTTCTCCATGCCTGGCGAAGCCAACACCAGGACTGCCATGGAGGATCACTCTTCCACCTGTGAATCCCCGCTCCTTGCCATACCCGACAGTAACGACTTGGCTGAGGATGGATCCTCAGATCTCAAAGGAAGGCCTGTTAGAAGGTCTCTCACTGGGGGATGGACAGCATCTCTTCTTATTATTGGCATTGAAATTGCAGAGAGATTGGCCTACTATGGCATTGCCTCTAACTTGGTCACATATCTCACAAATGTTATGCATCAGACCACTGTTACTGCTGCAAAAAATGTCAACGTTTGGGCAGGAACTGCATCCATGCTGCCCCTTCTCGGAGCTTTTGTTGCAGATTCTTATTTGGGTCGCTATTGGACCATTTTTTTCTCATCTGTTGTTTATTTGCTGGGCTTATGTTTGTTGACTCTGTCTGCCTCTCTTACATCTTTTAGACCCCCTCCATGTGACACCACATCATATACCTGCCCTGAAGGATCAGGTTTTCAGGTGGGTTTTTTCTTCTTTTCCCTTTATTTGGTTGCACTGGGGCAAGGAGGGCACAAACCTTGTCTGCAAGCATTTGGGGCAGACCAGTTTGATGACAGAGACCCAGACGAGAGGAAGCACAAGAGTTCATTCTTCAATTGGTGGTACTTTGGAATATCCAGTGGCTTGGTTGTGTCAATATCTGTGCTCATGTACATTCAAGAAAATGTTGGATGGGGTTTGGGGTTTTGTATCCCAACCATGGCAATGGCAATAGCACTCTCTCTTTTCATGTGTGGGACAAGATTGTACCGACATAAACTGCCTGGTGATAGTCCGTTCACTGGAATCGCCCAAGTCTTTGTAGCCAGTATCCGTAAATGGAATGTCTCTGTTCCTTCTCTGGGAGAAAAGAAAATATATGTTATTCAAGAAGAACAGCTTTTAAAGGGTGAAAAGAGTAGAGAGCTTTTGCCTACAAATCAGCTAAGGTTTCTTGACAAGGCAACTGTGGCGGTTGATTTCGATTACAAGCATAAAGACATTAACTGGAGACTATGCACAGTTACACAGGTTGAAGAGGTGAAACTTGTTCTAAGATTGTTACCTATTTGGGTGGCTTGTTTGATGTATGGGGTTGTCTTTGCACAATCCCCAACATTCTTCACAAAACAGGGAAGCACAATGGATAGAAAGATTGGTGACAACTTTGAGATTCCTGCCGCATCTTTACAAAGCTTCATTAGCCTCTCTATTCTTGTGCTTGTGCCTGTGTATGATCGCATATTTGTTCCAGTGGCCAGAAAAATAACCAAAAATGAGCGTGGTATAACACTGCTTCAGAGGATAGGTATTGGTATATTTACTTCCATTCTTTCTATGACTGTTGCTGCCTTGACAGAAATGAAAAGGCTCCAAGTGGCAAAGGATAATGGATTGGAAGATATGCCCCATGCCACGATTCCATTGAGCATTTTTTGGTTGCTTCCACAATACATACTATTTGGTATATCAGATGTTTTTACAATGATAGGACTGCAAGAATACTTTTATGATCAGATGCCTGACACAATGAGAAGCTTAGGTATCGCTCTCTATTTGAGTGTTTTCGGCATAGGTAGTTTCTTGAGCAGTTTTTATATTTCTATTCTTGAGGAACTAAGTAGCAGAGGGAAGAAGCAGAGCTGGTTTGCTGACAACCTGAACAGAGCTCATTTGGACTACTTTTATTGGTCTCTGGCTGCACTGAGTGCACTGTTCCTATGCATCTATGTTGCATTTGCTAGCTGCTTCATATATAAGAAAGTAGAAATCGATATTTGCCATGATGATGAAGAAACAACCTAATAGGCAAAGATATTGATTCTTGGATAATTCAGTTATCAATTCTTCAGTCCTATTTATAAAGTGACATGCATATCTCAAAGCATTGGAAGGATGTATATGCTGGGTATGATTAGTCCCTTCGTACATTGGGCACTGTAACCATCAGGGAATGAACTATTCCCAGGATTCCTGGAATAATATATATTTCCTGTTTTACTT

Ace file of the UniGene sp_v3.0_unigene19491

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to oligopeptide transporter, putative n=1 Tax=Vitis vinifera RepID=UPI0001985618	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G22540.1	Major facilitator superfamily protein chr1:7964202-7966222 FORWARD LENGTH=557	52%
RefSeq	Arabidopsis thaliana	NP_173670.2	putative peptide/nitrate transporter [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002334327.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWU3

Fln msg:

Fln protein: MPGEANTRTAMEDHSSTCESPLLAIPDSNDLAEDGSSDLKGRPVRRSLTGGWTASLLIIGIEIAERLAYYGIASNLVTYLTNVMHQTTVTAAKNVNVWAGTASMLPLLGAFVADSYLGRYWTIFFSSVVYLLGLCLLTLSASLTSFRPPPCDTTSYTCPEGSGFQVGFFFFSLYLVALGQGGHKPCLQAFGADQFDDRDPDERKHKSSFFNWWYFGISSGLVVSISVLMYIQENVGWGLGFCIPTMAMAIALSLFMCGTRLYRHKLPGDSPFTGIAQVFVASIRKWNVSVPSLGEKKIYVIQEEQLLKGEKSRELLPTNQLRFLDKATVAVDFDYKHKDINWRLCTVTQVEEVKLVLRLLPIWVACLMYGVVFAQSPTFFTKQGSTMDRKIGDNFEIPAASLQSFISLSILVLVPVYDRIFVPVARKITKNERGITLLQRIGIGIFTSILSMTVAALTEMKRLQVAKDNGLEDMPHATIPLSIFWLLPQYILFGISDVFTMIGLQEYFYDQMPDTMRSLGIALYLSVFGIGSFLSSFYISILEELSSRGKKQSWFADNLNRAHLDYFYWSLAALSALFLCIYVAFASCFIYKKVEIDICHDDEETT*

Protein Length: 608

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTTTGATTATCTTTTTCCTACATAATCGTTCTCC_-_ATGCCTGGCGAAGCCAACACCAGGACTGCCATGGAGGATCACTCTTCCACCTGTGAATCCCCGCTCCTTGCCATACCCGACAGTAACGACTTGGCTGAGGATGGATCCTCAGATCTCAAAGGAAGGCCTGTTAGAAGGTCTCTCACTGGGGGATGGACAGCATCTCTTCTTATTATTGGCATTGAAATTGCAGAGAGATTGGCCTACTATGGCATTGCCTCTAACTTGGTCACATATCTCACAAATGTTATGCATCAGACCACTGTTACTGCTGCAAAAAATGTCAACGTTTGGGCAGGAACTGCATCCATGCTGCCCCTTCTCGGAGCTTTTGTTGCAGATTCTTATTTGGGTCGCTATTGGACCATTTTTTTCTCATCTGTTGTTTATTTGCTGGGCTTATGTTTGTTGACTCTGTCTGCCTCTCTTACATCTTTTAGACCCCCTCCATGTGACACCACATCATATACCTGCCCTGAAGGATCAGGTTTTCAGGTGGGTTTTTTCTTCTTTTCCCTTTATTTGGTTGCACTGGGGCAAGGAGGGCACAAACCTTGTCTGCAAGCATTTGGGGCAGACCAGTTTGATGACAGAGACCCAGACGAGAGGAAGCACAAGAGTTCATTCTTCAATTGGTGGTACTTTGGAATATCCAGTGGCTTGGTTGTGTCAATATCTGTGCTCATGTACATTCAAGAAAATGTTGGATGGGGTTTGGGGTTTTGTATCCCAACCATGGCAATGGCAATAGCACTCTCTCTTTTCATGTGTGGGACAAGATTGTACCGACATAAACTGCCTGGTGATAGTCCGTTCACTGGAATCGCCCAAGTCTTTGTAGCCAGTATCCGTAAATGGAATGTCTCTGTTCCTTCTCTGGGAGAAAAGAAAATATATGTTATTCAAGAAGAACAGCTTTTAAAGGGTGAAAAGAGTAGAGAGCTTTTGCCTACAAATCAGCTAAGGTTTCTTGACAAGGCAACTGTGGCGGTTGATTTCGATTACAAGCATAAAGACATTAACTGGAGACTATGCACAGTTACACAGGTTGAAGAGGTGAAACTTGTTCTAAGATTGTTACCTATTTGGGTGGCTTGTTTGATGTATGGGGTTGTCTTTGCACAATCCCCAACATTCTTCACAAAACAGGGAAGCACAATGGATAGAAAGATTGGTGACAACTTTGAGATTCCTGCCGCATCTTTACAAAGCTTCATTAGCCTCTCTATTCTTGTGCTTGTGCCTGTGTATGATCGCATATTTGTTCCAGTGGCCAGAAAAATAACCAAAAATGAGCGTGGTATAACACTGCTTCAGAGGATAGGTATTGGTATATTTACTTCCATTCTTTCTATGACTGTTGCTGCCTTGACAGAAATGAAAAGGCTCCAAGTGGCAAAGGATAATGGATTGGAAGATATGCCCCATGCCACGATTCCATTGAGCATTTTTTGGTTGCTTCCACAATACATACTATTTGGTATATCAGATGTTTTTACAATGATAGGACTGCAAGAATACTTTTATGATCAGATGCCTGACACAATGAGAAGCTTAGGTATCGCTCTCTATTTGAGTGTTTTCGGCATAGGTAGTTTCTTGAGCAGTTTTTATATTTCTATTCTTGAGGAACTAAGTAGCAGAGGGAAGAAGCAGAGCTGGTTTGCTGACAACCTGAACAGAGCTCATTTGGACTACTTTTATTGGTCTCTGGCTGCACTGAGTGCACTGTTCCTATGCATCTATGTTGCATTTGCTAGCTGCTTCATATATAAGAAAGTAGAAATCGATATTTGCCATGATGATGAAGAAACAACCTAA___TAGGCAAAGATATTGATTCTTGGATAATTCAGTTATCAATTCTTCAGTCCTATTTATAAAGTGACATGCATATCTCAAAGCATTGGAAGGATGTATATGCTGGGTATGATTAGTCCCTTCGTACATTGGGCACTGTAACCATCAGGGAATGAACTATTCCCAGGATTCCTGGAATAATATATATTTCCTGTTTTACTT

Fln Alignment:

Contig19491___MPGEANTRTAMEDHSSTCESPLLAIPDSNDLAEDGSSDLKGRPVRRSLTGGWTASLLIIGIEIAERLAYYGIASNLVTYLTNVMHQTTVTAAKNVNVWAGTASMLPLLGAFVADSYLGRYWTIFFXXXXXXXXXXXXXXXXXXXXFRPPPCDTTSYTCPEXXXXXXXXXXXXLYLVALGQGGHKPCLQAFGADQFDDRDPDERKHKSSFFNWWYFXXXXXXXXXXXXXMYIQENVGWGLGFCIPTMAMAIALSLFMCGTRLYRHKLPGDSPFTGIAQVFVASIRKWNVSVPSLGEKKIYVIQEEQLLKGEKSRELLPTNQLRFLDKATVAVDFDYKHKDINWRLCTVTQVEEVKLVLRLLPIWVACLMYGVVFAQSPTFFTKQGSTMDRKIGDNFEIPAASLQSFISLSILVLVPVYDRIFVPVARKITKNERGITLLQRIGIGIFTSILSMTVAALTEMKRLQVAKDNGLEDMPHATIPLSIFWLLPQYILFGISDVFTMIGLQEYFYDQMPDTMRSLGIALYLSVFGIGSFLSSFYISILEELSSRGKKQSWFADNLNRAHLDYFYWSLAALSALFLCIYVAFASCFIYKKVEIDICHDDEET
A9NWU3_______________MPDKAHTRTAMEDHSSACESPLLATPD-NDLAEDGSTDLKGKPVRKSLTGGWTASLLIIGIEIAERLAYYGIASNLVTYLTNIMHQTTVTAVKNVNVWAGTASMLPLFGAFVADSYLGRYRTILISSIVYLLGLSLLTLSASLSSFRPPPCDITSYTCLKASGSQVGFFFFSLYLVALGQGGHKPCLQAFGADQFDERDPEERKYRSSFFNWWYFGMCSGLVVSISVLMYIQENVGWGLGFGIPTMAMAIALTVFLCGTRLYRHKLPGASPLTRIAQVFVATILKWNVPVPSQGEKNIYVIQEEQLLKGEKSRELLPKNQLRFLDKATVAVDLDYKHKDINWRLCTVTQVEEAKLVLRLLPIWVACLMYGVVFAQSPTFFTKQGSTMDRKIGENFEIPAASLQSFISLSILVLVPVYDRIFVPVARSITKNERGITLLQRIGIGIFISILSMTVAALTEMKRLQVAKDYGFEDMPHATIPLSIFWLLPQYILFGISDVFTMIGLQEYFYDQMPDTMRSVGIALYLSVFGIGSFLSSFFISIIEELSSGGKEQSWFADNLNRAHLDYFYWFLAALSALFLCIYVTFASCFIYKKVETDIFHDEETT

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
281	33			66	0.997452
282	33	66			0.997452
284	66		33		0.997452
285	66			33	0.997452
686	66			33	0.997452
1343	66			33	0.997452
1422	16		83		0.994512
1423	16			83	0.994512
1426		83		16	0.994512
1430	22	77			0.999999
1431	22			77	0.999999
1435		77		22	0.999999
1455			11	88	0.923564
1593		87		12	0.992554
1612		12	87		0.992554
1614	87			12	0.992554
1615			87	12	0.992554
1920		78	14	7	0.999974

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain