SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene19440

Length: 3006 nt

UniGene Fasta

>sp_v3.0_unigene19440
CGTCGTGACCTTGGCTGTCACTCAGATTTACATTGGCTTGTTACTGAAGTTTTTGCAGCAGCGACTGCTGTGAGGAGCTATAGGATGAAATGTCAGTGCCATACTGGGCAAGCAGACAACAAAATTTGGCGTTTTCTTGCTTCCTGTACAGTGGAGAATAGGGTGTGGGACAGAGATTTAGAACAGAGATTTGACACTGATGAATGTGAAACAGGGTACTGATTGGCTTTGCTTTATTCTTTTCTGGTAAGATTCGGAACAAAGGATCGGGATATATGCAACGTTGCATTATTGTTTAACAATCTGCACTAAGAGTCTAAAGTTTTTTCTTCAGCAAATATCATTTTCTTATGGCTTCTTTATGCATAATAATAGAACTGGCCCATATAAGGTTTGAGCCATCTGCAATTTAGTGAGAGTGGGCTCTCTCATTACTTGAACTATAGCTTGGTAGAGAAATCCCCTGTGGAGTTTTATCCTGATCCCAGGCGCTGAAAATGATGTATGATTTCTAAACAGAAGCTTCCTTTGCATCAAAGATATTGTAAGACAATGTGTTTTAGAGGGTAGACCTTGAAGACATAGGATGAAAGTATGAAAGGGATAATCGGCTCCAACAACTAGTGTAAACATGAAGACTTTTATGAACAGCTACTGGAAGATTGAAAGACAAGGGCAGGATGAGGCAAGGCCAGAGAGATGTACTAAAAAACGATACATATTCCTGGGTTTGTTGGTCTTTTTCCTTGGAGTTGCCATTGCTTGTTTAGCAGTTGGATTAGAAAGAGTACTCTTCAATAATGAGGGGGCGCCTAGTTTGAAAGATGGAATGAAAACCATACAGATGGTTTGCAGTGGCACCCTCTATCCAGACACATGCATTCGTTCACTTTCGTCGTTCCCTGGAGCAATGAATGCGTCTACCTTGAAGCTGGTTGCAATATCCATCAGAGTAAGTATGGAAGGAGTCAGTCAAGCAATGCAAACTATGGAGAACTCGATTCAGGATGAAACAGATCACATGGTGTCATTGCCTCTCAATGACTGTGTGGAGCTTCTCGAGTATTCACTAGATGGATTGAATTCGTCCCTGACTAAGCTTTTAGAATCCAATTTAGATGATATCTCTGATTTGCAGACATGGGTAAGCTCATCTCTGACATATCACACCACATGCTTTGATGGGCTCGGTAATACAGAAGGAAATCCCATTGATTACATCATGGAAGAGGGCAATAATGTGTCTCAACTCTTGAGTAATTGTTTGTCTCTCATCAAGGCTTTGCCAATGTTGGTAGGAGGGTCTGCAACTCCACCACATTCAAGGCGTTTGCTTTCGGATGTGGGAGATTCTGCTCAGCTTCCCAGCTGGATTTCGGAAAGAAAGAGGAGATATTTACTTGAGGATAAATCACTAGTCCCAGATATAGTTGTAGCCAAAGATGGAAGTGGGAATTATACAAGGATCCAAGATGCAGTAGATGCTGCTCCTCTGAGCAGAAATCAGAGCTATGTGATTCATATAAAAGCCGGGGTTTATGAAGAGAATGTCATTGTTTCGAAGAAAACGATCAACATTGTTTTCATTGGTGATGGCAATAGTAACACCATCATCTCCGGAAGCAAGAGTGAGAAAGATGGAATGACTGTTTACAGATCAGCCACTGTGGCTATTGATGGAAATGGATTCATTGCTCGAGATTTGACAATTGAAAACAATTCGGGTCCCAAGAGTATGCGAGCAGTCGCTCTTCGAGTGAGTGCAGACCAAACGGCCTTCTTTAATTGCTCATTCAAGGGATATCAGGGAACTCTATATTCACACACACTGCGCCAATTCTATAGAGAATGTACAATATCTGGCACAGTGGACTTCATCTTTGGCAACTCTGCTTCAATATTTCAGAATTGCACCCTACTGATTTTAAAGCCACTTCTGGGACAAAAAAGCACTTGTACAGCACAGGCCAAATCTGATCCCAATCAAAACACTGGATTTTCTTTTCAGAAATGTAGGGTTGATGGAACCCATGAACTCTTATCCTCGTCCAAAAACTTTACTACATACCTGGGGAGACCTTTGAAGCAATACTCATGCACAGTTTTCATCCATTCATATCTTACCAGAGTAGTGGACCCTGCTGGATGGCTCGCAAAAAAGGAAGATCTAGTTCTAGTGAATGTATTCATGGGAGAGTTTCAGAATGAAGGCCCTGGAAGCCAAGCTTCTGAGAGAGTTTACTGGTCCTTACAAATCTCTGAAGAACTAGCAAGTTCATTCAGTGTCCAGAACTTCATCTCTGGATCAAAGTGGCTTCCACTAACTCATATTAGATTTGAAGAGCTGACATGACTTTGCCCTCAACAATTCTGCTGTTAGTTCTGTTGCGACATGTTTTTGTTATGTCACAGAGAAATAGAGGATTCTGAAAGGAAAAAGTAATCCTGTTAATATCTTTGGCATAGATATATATGACGACTCTGGAAGATGATAACACTGGAGTATTCTTTGAAGATGCAGAGTTCATCCTAGAGGAGAACCGTGAAGTTAAAATGAACAGAGATTTGAGTCACTGTGTGTATTATTTTGAAAGGAACTAAATTTGAGCGCAGGATAATTTAGAAGCATTGTTGCATGGGTACTTCCATCCCCTCCTGTACCGTACCTGCACCACATCCTGATTCTATCATCCTTTAGTAAAGAAATCAACATACCTATACCTACCCATAGTTCAAAAGGTTTTCATCCCTGTACCCACTTCTTCCCTCAGCTGTACACATGCAACATGGCTTAGGAGCTTTAGATCCAATAAACTTTAAGTGCACTTTTATTAAGAGAATGTTATCCTGTATCAAGTCAATGTGGATGCAGGAGCAGAGACAATTACCGAGGCATTCAAGGTATTATAATGGTAGAGTGTTTGGTTTATTACAGTCAAAATGTAATTTTGGCCTTATTGGTTGTGCCTTTATGTTAGCTATATAATTTACTAAGTCTTTTGGTTT

Ace file of the UniGene sp_v3.0_unigene19440

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pectinesterase n=1 Tax=Picea sitchensis RepID=C0PT44_PICSI	-	-	0.0	40%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Sma3	Pectinesterase	-	-	1.10703e-43	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pectinesterase.	EC:3.1.1.11	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Pentose and glucuronate interconversions	00040	%
Sma3	Starch and sucrose metabolism	00500	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	ARATH16; ARATH17; ARATH22; ARATH35; At2g43050; At2g45220; At3g05620; At3g14310; At3g59010; B1011A07.22; F17J16.60; F18C1.11; F4L23.27; GSVIVT00017261001; GSVIVT00017264001; GSVIVT00017266001; GSVIVT00017269001; GSVIVT00026388001; GSVIVT00028033001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	enzyme inhibitor activity	GO:0004857	Molecular Function	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	-
Sma3	aspartyl esterase activity	GO:0045330	Molecular Function	-
Sma3	cell wall modification	GO:0042545	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	Carbohydrate-binding/sugar hydrolysis domain	IPR006633	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PT44

Fln msg: your sequence is shorter than subject: 574 - 601

Fln protein: MKTFMNSYWKIERQGQDEARPERCTKKRYIFLGLLVFFLGVAIACLAVGLERVLFNNEGAPSLKDGMKTIQMVCSGTLYPDTCIRSLSSFPGAMNASTLKLVAISIRVSMEGVSQAMQTMENSIQDETDHMVSLPLNDCVELLEYSLDGLNSSLTKLLESNLDDISDLQTWVSSSLTYHTTCFDGLGNTEGNPIDYIMEEGNNVSQLLSNCLSLIKALPMLVGGSATPPHSRRLLSDVGDSAQLPSWISERKRRYLLEDKSLVPDIVVAKDGSGNYTRIQDAVDAAPLSRNQSYVIHIKAGVYEENVIVSKKTINIVFIGDGNSNTIISGSKSEKDGMTVYRSATVAIDGNGFIARDLTIENNSGPKSMRAVALRVSADQTAFFNCSFKGYQGTLYSHTLRQFYRECTISGTVDFIFGNSASIFQNCTLLILKPLLGQKSTCTAQAKSDPNQNTGFSFQKCRVDGTHELLSSSKNFTTYLGRPLKQYSCTVFIHSYLTRVVDPAGWLAKKEDLVLVNVFMGEFQNEGPGSQASERVYWSLQISEELASSFSVQNFISGSKWLPLTHIRFEELT*

Protein Length: 575

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATTTACATTGGCTTGTTACTGAAGTTTTTGCAGCAGCGACTGCTGTGAGGAGCTATAGGATGAAATGTCAGTGCCATACTGGGCAAGCAGACAACAAAATTTGGCGTTTTCTTGCTTCCTGTACAGTGGAGAATAGGGTGTGGGACAGAGATTTAGAACAGAGATTTGACACTGATGAATGTGAAACAGGGTACTGATTGGCTTTGCTTTATTCTTTTCTGGTAAGATTCGGAACAAAGGATCGGGATATATGCAACGTTGCATTATTGTTTAACAATCTGCACTAAGAGTCTAAAGTTTTTTCTTCAGCAAATATCATTTTCTTATGGCTTCTTTATGCATAATAATAGAACTGGCCCATATAAGGTTTGAGCCATCTGCAATTTAGTGAGAGTGGGCTCTCTCATTACTTGAACTATAGCTTGGTAGAGAAATCCCCTGTGGAGTTTTATCCTGATCCCAGGCGCTGAAAATGATGTATGATTTCTAAACAGAAGCTTCCTTTGCATCAAAGATATTGTAAGACAATGTGTTTTAGAGGGTAGACCTTGAAGACATAGGATGAAAGTATGAAAGGGATAATCGGCTCCAACAACTAGTGTAAAC_-_ATGAAGACTTTTATGAACAGCTACTGGAAGATTGAAAGACAAGGGCAGGATGAGGCAAGGCCAGAGAGATGTACTAAAAAACGATACATATTCCTGGGTTTGTTGGTCTTTTTCCTTGGAGTTGCCATTGCTTGTTTAGCAGTTGGATTAGAAAGAGTACTCTTCAATAATGAGGGGGCGCCTAGTTTGAAAGATGGAATGAAAACCATACAGATGGTTTGCAGTGGCACCCTCTATCCAGACACATGCATTCGTTCACTTTCGTCGTTCCCTGGAGCAATGAATGCGTCTACCTTGAAGCTGGTTGCAATATCCATCAGAGTAAGTATGGAAGGAGTCAGTCAAGCAATGCAAACTATGGAGAACTCGATTCAGGATGAAACAGATCACATGGTGTCATTGCCTCTCAATGACTGTGTGGAGCTTCTCGAGTATTCACTAGATGGATTGAATTCGTCCCTGACTAAGCTTTTAGAATCCAATTTAGATGATATCTCTGATTTGCAGACATGGGTAAGCTCATCTCTGACATATCACACCACATGCTTTGATGGGCTCGGTAATACAGAAGGAAATCCCATTGATTACATCATGGAAGAGGGCAATAATGTGTCTCAACTCTTGAGTAATTGTTTGTCTCTCATCAAGGCTTTGCCAATGTTGGTAGGAGGGTCTGCAACTCCACCACATTCAAGGCGTTTGCTTTCGGATGTGGGAGATTCTGCTCAGCTTCCCAGCTGGATTTCGGAAAGAAAGAGGAGATATTTACTTGAGGATAAATCACTAGTCCCAGATATAGTTGTAGCCAAAGATGGAAGTGGGAATTATACAAGGATCCAAGATGCAGTAGATGCTGCTCCTCTGAGCAGAAATCAGAGCTATGTGATTCATATAAAAGCCGGGGTTTATGAAGAGAATGTCATTGTTTCGAAGAAAACGATCAACATTGTTTTCATTGGTGATGGCAATAGTAACACCATCATCTCCGGAAGCAAGAGTGAGAAAGATGGAATGACTGTTTACAGATCAGCCACTGTGGCTATTGATGGAAATGGATTCATTGCTCGAGATTTGACAATTGAAAACAATTCGGGTCCCAAGAGTATGCGAGCAGTCGCTCTTCGAGTGAGTGCAGACCAAACGGCCTTCTTTAATTGCTCATTCAAGGGATATCAGGGAACTCTATATTCACACACACTGCGCCAATTCTATAGAGAATGTACAATATCTGGCACAGTGGACTTCATCTTTGGCAACTCTGCTTCAATATTTCAGAATTGCACCCTACTGATTTTAAAGCCACTTCTGGGACAAAAAAGCACTTGTACAGCACAGGCCAAATCTGATCCCAATCAAAACACTGGATTTTCTTTTCAGAAATGTAGGGTTGATGGAACCCATGAACTCTTATCCTCGTCCAAAAACTTTACTACATACCTGGGGAGACCTTTGAAGCAATACTCATGCACAGTTTTCATCCATTCATATCTTACCAGAGTAGTGGACCCTGCTGGATGGCTCGCAAAAAAGGAAGATCTAGTTCTAGTGAATGTATTCATGGGAGAGTTTCAGAATGAAGGCCCTGGAAGCCAAGCTTCTGAGAGAGTTTACTGGTCCTTACAAATCTCTGAAGAACTAGCAAGTTCATTCAGTGTCCAGAACTTCATCTCTGGATCAAAGTGGCTTCCACTAACTCATATTAGATTTGAAGAGCTGACATGA___CTTTGCCCTCAACAATTCTGCTGTTAGTTCTGTTGCGACATGTTTTTGTTATGTCACAGAGAAATAGAGGATTCTGAAAGGAAAAAGTAATCCTGTTAATATCTTTGGCATAGATATATATGACGACTCTGGAAGATGATAACACTGGAGTATTCTTTGAAGATGCAGAGTTCATCCTAGAGGAGAACCGTGAAGTTAAAATGAACAGAGATTTGAGTCACTGTGTGTATTATTTTGAAAGGAACTAAATTTGAGCGCAGGATAATTTAGAAGCATTGTTGCATGGGTACTTCCATCCCCTCCTGTACCGTACCTGCACCACATCCTGATTCTATCATCCTTTAGTAAAGAAATCAACATACCTATACCTACCCATAGTTCAAAAGGTTTTCATCCCTGTACCCACTTCTTCCCTCAGCTGTACACATGCAACATGGCTTAGGAGCTTTAGATCCAATAAACTTTAAGTGCACTTTTATTAAGAGAATGTTATCCTGTATCAAGTCAATGTGGATGCAGGAGCAGAGACAATTACCGAGGCATTCAAGGTATTATAATGGTAGAGTGTTTGGTTTATTACAGTCAAAATGTAATTTTGGCCTTATTGGTTGTGCCTTTATGTTAGCTATATAATTTACTAAGTCTTTTGGTTT

Fln Alignment:

Contig19440___EARPERCTK----KRYIXXXXXXXXXXXAIACLAVGLERVLFNNEGAP---------SLKDGMKTIQMVCSGTLYPDTCIRSLSSFPGAMN-ASTLKLVAISIRVSMEGVSQAMQTMENS-IQDETDHMVSLPLNDCVELLEYSLDGLNSSLTKLLESNL----DDISDLQTWVSSSLTYHTTCFDGLGNTEGNPIDYIMEEGNNVSQLLSNCLSLIKALPMLVGG-SATPPHSRRLLSD-------VGDSAQLPSWISERKRRYLLEDK-SLVPDIVVAKDGSGNYTRIQDAVDAAPLSRNQSYVIHIKAGVYEENVIVSKKTINIVFIGDGNSNTIISGSKSEKDGMTVYRSATVAIDGNGFIARDLTIENNSGPKSMRAVALRVSADQTAFFNCSFKGYQGTLYSHTLRQFYRECTISGTVDFIFGNSASIFQNCTLLILKPLLGQKSTCTAQAKSDPNQNTGFSFQKCRVDGTHELLSSSKNFTTYLGRPLKQYSCTVFIHSYLTRVVDPAGWLAKKEDLVLVNVFMGEFQNEGPGSQASERVYW----SLQISEELASSFSVQNFISGSKWLPLTHIRF
C0PT44_______________EQSPMRATRWKSGKRILVTAVASTLLVISVICLSVGIAGRFKKEKNEDDDRQIGHIKNWKSVPKVVQDACSSTLYPELCVSSVSSFPGLSDRAGPIEIVHVVLSVSIAAVEKANALARIMWTRPGLSHRKRGALQDCLELFDETLDELYETVSNLKNGSCMSAPEKVNDLETLLSAAITNQYTCLDS--SARSNLRQELQGGLMSISHLVSNSLAIVKNIATRASNVTVNSIHNRRLLSDDQGSEFMAMESDGFPSWMSAKERSLLQSSRDNIMPNAVVAKDGSGHHTSIGDAVNAAPQKSRTRYVIHIKAGIYWENVEVNKKKTHLMFIGDGIGATVVAGNRNVKDGYTTYRSATVAVNGNGFIARDITFENTAGAAKHQAVALRVGSDFSAFYRCSFQGYQDTLYVHSLRQFYRECNVYGTVDFIFGNAAVVLQNCNLFARKPLANQQIVYTAQGRQDPNENTGISIQNCQVIAASDLIPVKRSFPAYLGRPWRQYSRTVFMQSYLGDLIQPAGWLEWNGNFALNTLYYGEFMNRGPGAGVANRVRWPGYRAIRSSNE-AKQFTVSQFIKGDSWLPSTGVKY

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
1389	25		75		0.996473
1393	75		25		0.996473
1485		88		11	0.923564
1515		11		88	0.923564
1538		22		77	0.999999
1539	88		11		0.923564
1565	80		20		0.999996
1709	27		72		1.0
2069		88		11	0.923564
2282	88	11			0.923564
2448	11		88		0.923564
2478	84		15		0.999986
2489	84		15		0.999986
2610	11		88		0.999952
2637		17		82	1.0
2654		12		87	0.999964
2698		84	15		0.999986
2760	90			10	0.90298
2796	70		29		1.0
2808		78		21	1.0
2852	20		80		0.999996
2954	33	66			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain