SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene19327

Length: 2209 nt

UniGene Fasta

>sp_v3.0_unigene19327
ATGGAATCCGTCATCCAGATGACATTCTCGGTGCTCTGTCTCGTCGTGACCTTGGCTGTCACTCATTTTGCCCCTTGTCAAATATGTTTTCATTGTGCTCTGGGCCGATGATAACGGAGACGGTGGGACGTTTGCACTTTATTCCCTGATATGCCGCCATGCAAAGGTGAACGTTATAGCGAAGCAACAAGCAGAGGACAGAGAGCTTTCAACATATAAGCTTGCTATACCCAGTAGACAGCTCAAAAGGGCTTTGAAGGTAAAAGAAGTTTTAGAGAAAAGTAATGCAGCTAAGACAATTTTACTCATGCTGGCGCTTCTTGGTACCTCTATGGTTATTGGAGATGGTGTCCTCACTCCTTGCATCTCAGTTATATCAGCTGTTCAAGGAATAAAGACTGTCCACAATTCACTCAGCCAGGAGGTGGTGGCTATGATATCTGTGGCGATTTTAGTAATACTCTTTTCTGTCCAGAGATTCGGAACCCAAAAAGTTGGTTACTCATTCGCCCCTGCTATTTTGATATGGTACTTGTTTATTTCCTTCATTGGAATCTACAACATGGCCAAGCATGATACAAGCGTCTTCAAGGCTTTCTATCCTAAATACATCTTTGATTACTTCAGAAGAAATTCAAAACAGGGTTGGATTTCACTCGGAGGAATAGTTCTATGCATAACGGGAACTGAAGCTATGTTTGCAGATCTGGGTCATTTTTCTGTTCGTTCAATTCAGATTGCCTTCACTGGAGTAGTGTACCCTGCTTTAATCTGCGCATATGTAGGCCAAGCTGCTTACCTGAGGAAGTTTCCCGAAGATGTGGCAGACACTTTCTATAAATCAACTCCAAATGGTATATATTGGCCAATGTTTGTGGTTGCAATTATTGCTGCTGTTATTGCAAGCCAGGCCATGATTTCTGCGACTTTTTCTATCATAAAGCAATCCATGGCCCTCGATTGCTTTCCCCGTGTTACAGTTATCCACGCTTCATCTAAATATGAAGGGCAGGTCTATATACCAGAAATCAACTTCATCCTCATGATTGCATGTGTTGTGGTCACTGCTTCCTTCAAGAATACAACTAAAATCGGCAATGCATATGGCATAGCGGTTGTTGGAGTTATGATTGTGACTTCAACCTTCCTGACATTGGTAATGCTTATAATATGGCAGTCTCATCTGTTTCTTGTTGTAATCTTTGTCATTGTATTTGGGGCAATAGAGTCTGTATTCTTCTCAGCAGTGTTGTACAAGTTTCCCCAAGGGGGATACCTCCCATTGGCTTTTGCTGCAGTATTGTTATTCGTAATGTATGTATGGCATTATGTCCATGCAAAGAGATATGCCTATGAGGTGGAGCAGAAGGTGTCAACAGAATACATGTTAGACCTGGGTTCGAGTCTAAGTGTGAGCAAAGTTCCAGGGATTGGGCTTCTGTACACAGAACTAGCACACGGAGTTCCAGCAATATTTGCACATTTTGTGAGAAACCTCCCTGCCATACATTCTGTGCTTGTATTCGTCTGTGTCAAGTATCTGCCTGTGAATACAGTTCCAGCTGGAGAACGCTTTCTATTTCGCTGTATTGGTCCCAAGGAACAAAAATGTACAGGTGCATTGCTAGGTATGGTTATAGGGACACACGGACTGGGAATGTGGAGTTTGAAAATCAGTTACTGGAATTCCTGAAAAAGTTTATACGATCGGATGACATACACACATATGATATGAATAACCAACCTCGGTGTGATGATAATTATTGTGGCGGTACAGAGAGTGTAGTTGATATCGGGGCGGTCTCTGAAAATGCAGTCATGAATGCCTGCACCATGGAAAACGTCGAGGAGGAGTTGGATTTCTTAGAAAATGCAAAGAAATCAGGTGTGGTATATTTGATGGGCGATAGTGAGGTTATTGCAAGCAAAGATTCATCGTTGTTAAAAAGATTCATAGTGAACTATGCATATGACATTTTGAAGAGGAATTGCAGAAAGGGACAAGCTGCTTTGGAGATCCCACACAGAAATCTTTTGCAAGTTGGCATGACCTACTATATCTGAACCAGATCACATCTGTGATATTTTTGTATATGCAGATCTTGTGCCCCACCATATAAGGTGACATACATCTAATACTCAAGAAAGCCTTAAAATTACAAACTTTTGTTATTCAAATACATGTTTATTTATTCAAGCTTTTAAAAAA

Ace file of the UniGene sp_v3.0_unigene19327

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	high-affinity K+ transporter [Capsicum annuum]	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Sma3	Potassium transporter, putative	-	-	-

Source	Gene names
Sma3	6J23.11; At1g31120; At1g60160; At1g70300; At2g30070; At2g35060; At2g40540; At3g02050; At4g13420; At4g19960; At4g23640; At4g33530; At5g09400; At5g14880; B1026C12.31-1; B1026C12.31-2; CHLREDRAFT_121823; CHLREDRAFT_123407; F17M5.1; F17O7.17; F18F4.60; F1C9.1

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	potassium:sodium symporter activity	GO:0009674	Molecular Function	-
Sma3	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, NF-X1-type	IPR000967	-	-
Sma3	Single-stranded nucleic acid binding R3H	IPR001374	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3		IPR018519	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G13420.1	HAK5, ATHAK5 high affinity K+ transporter 5 chr4:7797038-7802174 REVERSE LENGTH=785	58%
RefSeq	Arabidopsis thaliana	NP_567404.1	Potassium transporter 5 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002332061.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8F8

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 166 aas, putative chimeric sequence, your sequence is longer than subject: 462 - 250

Fln protein: MLALLGTSMVIGDGVLTPCISVISAVQGIKTVHNSLSQEVVAMISVAILVILFSVQRFGTQKVGYSFAPAILIWYLFISFIGIYNMAKHDTSVFKAFYPKYIFDYFRRNSKQGWISLGGIVLCITGTEAMFADLGHFSVRSIQIAFTGVVYPALICAYVGQAAYLRKFPEDVADTFYKSTPNGIYWPMFVVAIIAAVIASQAMISATFSIIKQSMALDCFPRVTVIHASSKYEGQVYIPEINFILMIACVVVTASFKNTTKIGNAYGIAVVGVMIVTSTFLTLVMLIIWQSHLFLVVIFVIVFGAIESVFFSAVLYKFPQGGYLPLAFAAVLLFVMYVWHYVHAKRYAYEVEQKVSTEYMLDLGSSLSVSKVPGIGLLYTELAHGVPAIFAHFVRNLPAIHSVLVFVCVKYLPVNTVPAGERFLFRCIGPKEQKCTGALLGMVIGTHGLGMWSLKISYWNS*

Protein Length: 463

Fln nts: ATGGAATCCGTCATCCAGATGACATTCTCGGTGCTCTGTCTCGTCGTGACCTTGGCTGTCACTCATTTTGCCCCTTGTCAAATATGTTTTCATTGTGCTCTGGGCCGATGATAACGGAGACGGTGGGACGTTTGCACTTTATTCCCTGATATGCCGCCATGCAAAGGTGAACGTTATAGCGAAGCAACAAGCAGAGGACAGAGAGCTTTCAACATATAAGCTTGCTATACCCAGTAGACAGCTCAAAAGGGCTTTGAAGGTAAAAGAAGTTTTAGAGAAAAGTAATGCAGCTAAGACAATTTTACTC_-_ATGCTGGCGCTTCTTGGTACCTCTATGGTTATTGGAGATGGTGTCCTCACTCCTTGCATCTCAGTTATATCAGCTGTTCAAGGAATAAAGACTGTCCACAATTCACTCAGCCAGGAGGTGGTGGCTATGATATCTGTGGCGATTTTAGTAATACTCTTTTCTGTCCAGAGATTCGGAACCCAAAAAGTTGGTTACTCATTCGCCCCTGCTATTTTGATATGGTACTTGTTTATTTCCTTCATTGGAATCTACAACATGGCCAAGCATGATACAAGCGTCTTCAAGGCTTTCTATCCTAAATACATCTTTGATTACTTCAGAAGAAATTCAAAACAGGGTTGGATTTCACTCGGAGGAATAGTTCTATGCATAACGGGAACTGAAGCTATGTTTGCAGATCTGGGTCATTTTTCTGTTCGTTCAATTCAGATTGCCTTCACTGGAGTAGTGTACCCTGCTTTAATCTGCGCATATGTAGGCCAAGCTGCTTACCTGAGGAAGTTTCCCGAAGATGTGGCAGACACTTTCTATAAATCAACTCCAAATGGTATATATTGGCCAATGTTTGTGGTTGCAATTATTGCTGCTGTTATTGCAAGCCAGGCCATGATTTCTGCGACTTTTTCTATCATAAAGCAATCCATGGCCCTCGATTGCTTTCCCCGTGTTACAGTTATCCACGCTTCATCTAAATATGAAGGGCAGGTCTATATACCAGAAATCAACTTCATCCTCATGATTGCATGTGTTGTGGTCACTGCTTCCTTCAAGAATACAACTAAAATCGGCAATGCATATGGCATAGCGGTTGTTGGAGTTATGATTGTGACTTCAACCTTCCTGACATTGGTAATGCTTATAATATGGCAGTCTCATCTGTTTCTTGTTGTAATCTTTGTCATTGTATTTGGGGCAATAGAGTCTGTATTCTTCTCAGCAGTGTTGTACAAGTTTCCCCAAGGGGGATACCTCCCATTGGCTTTTGCTGCAGTATTGTTATTCGTAATGTATGTATGGCATTATGTCCATGCAAAGAGATATGCCTATGAGGTGGAGCAGAAGGTGTCAACAGAATACATGTTAGACCTGGGTTCGAGTCTAAGTGTGAGCAAAGTTCCAGGGATTGGGCTTCTGTACACAGAACTAGCACACGGAGTTCCAGCAATATTTGCACATTTTGTGAGAAACCTCCCTGCCATACATTCTGTGCTTGTATTCGTCTGTGTCAAGTATCTGCCTGTGAATACAGTTCCAGCTGGAGAACGCTTTCTATTTCGCTGTATTGGTCCCAAGGAACAAAAATGTACAGGTGCATTGCTAGGTATGGTTATAGGGACACACGGACTGGGAATGTGGAGTTTGAAAATCAGTTACTGGAATTCCTGA___AAAAGTTTATACGATCGGATGACATACACACATATGATATGAATAACCAACCTCGGTGTGATGATAATTATTGTGGCGGTACAGAGAGTGTAGTTGATATCGGGGCGGTCTCTGAAAATGCAGTCATGAATGCCTGCACCATGGAAAACGTCGAGGAGGAGTTGGATTTCTTAGAAAATGCAAAGAAATCAGGTGTGGTATATTTGATGGGCGATAGTGAGGTTATTGCAAGCAAAGATTCATCGTTGTTAAAAAGATTCATAGTGAACTATGCATATGACATTTTGAAGAGGAATTGCAGAAAGGGACAAGCTGCTTTGGAGATCCCACACAGAAATCTTTTGCAAGTTGGCATGACCTACTATATCTGAACCAGATCACATCTGTGATATTTTTGTATATGCAGATCTTGTGCCCCACCATATAAGGTGACATACATCTAATACTCAAGAAAGCCTTAAAATTACAAACTTTTGTTATTCAAATACATGTTTATTTATTCAAGCTTTTAAAAAA

Fln Alignment:

Contig19327___LYTELAHGVPAIFAHFVRNLPAIHSVLVFVCVKYLPVNTVPAGERFLFRCIGPKEQK
D5A8F8_______________MYTELVTGIPANFTHFVTNLPAFHQVLIFICIKSVPVPYVPPEERFLIGRVGPKEYR

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
45		66		33	0.997452
46	33		66		0.997452
48	33		66		0.997452
50		66		33	0.997452
51		66		33	0.997452
53	33			66	0.997452
54			66	33	0.997452
55			66	33	0.997452
57	33			66	0.997452
58		33	66		0.997452
60		66		33	0.997452
115		75		25	0.996473
170	75		25		0.996473
171	75		25		0.996473
176	75		25		0.996473
178	75	25			0.996473
179	25		75		0.996473
181	25		75		0.996473
184			75	25	0.996473
202	25		75		0.996473
206	25		75		0.996473
209			25	75	0.996473
243		75		25	0.996473
261	25		75		0.996473
384			33	66	0.997452
390	66		33		0.997452
397	66	33			0.997452
406		66	33		0.997452
411	33			66	0.997452
995	33		66		0.997452
1903		16		83	0.994512
2016		25		75	0.996473
2087		33	66		0.997452
2092		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain