SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene19296

Length: 247 nt

UniGene Fasta

>sp_v3.0_unigene19296
TGTGTTTTCAACATAGATTCCAAAGTTTCCTCCCCACAGGGAAGTGGACTTTTCTATTGAGTTGGTACAAGGAGCAACACCAACATTAAAGGCACCTTATAGGATTAGCACTCCAGAGTTGGTAGAGTTGAAGTTGTAGTTGAAGGAAATGCTTGATAAGGAATACATTAGGTTGAGTGTATAGCCTTGTGGTGCACCAGTATAGTTCATAAAGAAACATGATTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v3.0_unigene19296

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger, CCHC-type; Peptidase aspartic, active site; Retrotransposon gag protein n=1 Tax=Medicago truncatula RepID=Q2HW87_MEDTR	-	-	3.0e-07	43%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	58%

Source	Gene names
Sma3	MtrDRAFT_AC147774g4v1; VITISV_000582; VITISV_009934; VITISV_025813; VITISV_035077;

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3		IPR013084	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5C4D9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 497 aas, your sequence is shorter than subject: 61 - 1074

Fln protein: VFST*IPKFPPHREVDFSIELVQGATPTLKAPYRISTPELVELKL*LKEMLDKEYIRLSV*

Protein Length: 62

Fln nts: TGTGTTTTCAACATAGATTCCAAAGTTTCCTCCCCACAGGGAAGTGGACTTTTCTATTGAGTTGGTACAAGGAGCAACACCAACATTAAAGGCACCTTATAGGATTAGCACTCCAGAGTTGGTAGAGTTGAAGTTGTAGTTGAAGGAAATGCTTGATAAGGAATACATTAGGTTGAGTGTATAGCCTTGTGGTGCACCAGTATAGTTCATAAAGAAACATGATTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

Contig19296___VFST*IPKFPPHREVDFSIELVQGATPTLKAPYRISTPXXXXXXXXXXXXXXXXYIRLSV*PCGAPV*FIKKHD
A5C4D9_______________VFPEDLPGLPPEREVDFTIDVAPGTTPISKAPYRMAPLELKELKIQLQELLDKGFIRLSVSPWGAPVLFVKKND

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain