SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene19259

Length: 487 nt

UniGene Fasta

>sp_v3.0_unigene19259
CTATGGGATGATATATGATTCTTCGGGCAAGCAAATTCGCCCGTTTAGAGGCGCAAACTTCTCAATGCACGGGGATTTTGTCTCCTCTGATGCAGGAATACTCCTGCCCGTTTATTGAGCTTCACACAGTGGCTTAGCAAGGGATTTCACCTGCCATACAAAAAGCTTGCATTTGGTATGGAGTTACTGCAAATGAATGAAACCATAAAGAGGCATTGGTTCTGAGTACTGCCAATAGTATTCATCAAAAAACCTCAGGAGAAAGAACCAAGAACTTAGAAAACAGTATGGCATTCTGGGACCTTCTAACTGTGGCATCCATGCCAGTTGTGAAGATTCTTCTGATAAGTGGTCTTGGAGCCGTTCTGTCAACTCAGTATGTTGGCGTGCTTACTGAAGCTTGTCTAAAACATATGAATAAGGTCATTTTTGTTGTATTTACACCAGCACTTATGTTCGCAAGCCTGGCACAATCAGTGACATTCGA

Ace file of the UniGene sp_v3.0_unigene19259

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Auxin:hydrogen symporter, putative n=1 Tax=Ricinus communis RepID=B9S6X0_RICCO	-	-	4.0e-16	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Os09g0554300 protein	-	-	8.772e-06	-

Source	Gene names
Sma3	Os09g0554300; OsI_32333; OsI_32336; OsJ_30279; OsJ_30282; RCOM_0875040;

Source	GOs	Term	Type	e value	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Auxin efflux carrier	IPR004776	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G65980.1	Auxin efflux carrier family protein chr5:26392444-26394232 FORWARD LENGTH=395	5.0e-16	55%
RefSeq	Arabidopsis thaliana	NP_201399.1	auxin efflux carrier family protein [Arabidopsis thaliana]	6.0e-16	55%
RefSeq	Populus trichocarpa	XP_002306421.1	predicted protein [Populus trichocarpa]	3.0e-17	52%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL56

Fln msg: Distance to subject end: 359 aas, your sequence is shorter than subject: 66 - 426

Fln protein: MAFWDLLTVASMPVVKILLISGLGAVLSTQYVGVLTEACLKHMNKVIFVVFTPALMFASLAQSVTF

Protein Length: 67

Fln nts: CTATGGGATGATATATGATTCTTCGGGCAAGCAAATTCGCCCGTTTAGAGGCGCAAACTTCTCAATGCACGGGGATTTTGTCTCCTCTGATGCAGGAATACTCCTGCCCGTTTATTGAGCTTCACACAGTGGCTTAGCAAGGGATTTCACCTGCCATACAAAAAGCTTGCATTTGGTATGGAGTTACTGCAAATGAATGAAACCATAAAGAGGCATTGGTTCTGAGTACTGCCAATAGTATTCATCAAAAAACCTCAGGAGAAAGAACCAAGAACTTAGAAAACAGT_-_ATGGCATTCTGGGACCTTCTAACTGTGGCATCCATGCCAGTTGTGAAGATTCTTCTGATAAGTGGTCTTGGAGCCGTTCTGTCAACTCAGTATGTTGGCGTGCTTACTGAAGCTTGTCTAAAACATATGAATAAGGTCATTTTTGTTGTATTTACACCAGCACTTATGTTCGCAAGCCTGGCACAATCAGTGACATTCGA

Fln Alignment:

Contig19259___MAFWDLLTVASMPVVKILLISGLGAVLSTQYVGVLTEACLKHMNKVIFVVFTPALMFASLAQSVTF
B8LL56_______________MAFWDLLIVASMPVVKILLISGLGAVLSTRYAGVLTEDSLKHVNKVIFVVFTPALMFASLAQSVTF

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
5			75	25	0.996473
6			75	25	0.996473
7	25		75		0.996473
8	33	33	33		0.998258
35	83			16	0.994512
55	16		83		0.994512
100	66		33		1.0
110		66		33	1.0
111		66		33	1.0
142	50			50	1.0
166	80		20		0.995493
193	40		60		1.0
210	40		60		1.0
271		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain