SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene19202

Length: 1839 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene19202

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WRKY DNA-binding protein 21 [Arabidopsis thaliana] sp\|O04336.1\|WRK21_ARATH RecName: Full=Probable WRKY transcription factor 21; AltName: Full=WRKY DNA-binding protein 21 gb\|AAK28441.1\|AF272747_1 WRKY DNA-binding protein 21 [Arabidopsis thaliana] gb\|AAB630	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	WRKY transcription factor, putative	-	-	6.802e-16	-

Source	Gene names
Sma3	A_IG002N01.6; At1g29280; At1g30650; At2g30590; At3g04670; At3g58710; At4g01250; At5g28650; At5g52830; F2N1.6; F4I4.30; F7O18.30; GSVIVT00002171001; GSVIVT00002535001; GSVIVT00007309001; GSVIVT00014872001; GSVIVT00018784001; GSVIVT00019549001; GSVIVT000233

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Transcription factor, WRKY group Iie	IPR017412	-	-
Sma3	Zn-cluster domain	IPR018872	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G30590.1	WRKY21 WRKY DNA-binding protein 21 chr2:13033891-13035303 FORWARD LENGTH=380	60%
RefSeq	Arabidopsis thaliana	NP_565703.1	WRKY DNA-binding protein 21 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002302070.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADG5

Fln msg:

Fln protein: MASKLYMKQRIMDPVNISLSLNIQRDRDVQIMSRAGLDSAQRMVSILSQKHQQNQQEQVQQEFGLAAEDALSKLNKVVSLLSRKGHARVRRGPLQTQSASGSGSEQLFMDGPNFLDLESPKTHASASIYSSSSSDFALSQCVKQFLPCQSSSSGVLSADTNRHQQLHPQMHYPPLQLQHLSPQAEVMFRNGYMQLDNSMSCTATISSTKSFVSSLSMDGSIANDKQLLQYQSISAAQERIPGASSKRKCSGKGDDSSKCGSTGRCHCSKRRKLRVKRTIRVPAISSKLADIPPDEFSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERSLEDPSMLIVTYEGEHNHSRLLSSNSSLIVHP*

Protein Length: 366

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCAAATAACCGTCGTGACCTTGGCTGTCACTCAAGTTTTTGCTTTCTGTATTGATGGTGAAGATTGGCGAGGTTAAGAGTTTTCTTTCATGTGTGTGAGGACGTTTCTTTGCATAGCAGAGGGATTTTCATGGAGATGACCAGAGTAAATTTGATTGTTGTTTTGCAGATATCTTTCATATGAATCGGTAACAGTAGCTTCTCCTGACCACATTTTT_-_ATGGCAAGCAAGTTATATATGAAGCAGAGGATAATGGACCCAGTAAACATTTCCCTTTCCCTTAATATCCAGAGGGATCGCGATGTGCAAATAATGAGTAGAGCAGGTTTAGACAGTGCGCAGCGCATGGTGAGCATTCTATCACAGAAACATCAGCAGAATCAACAAGAACAGGTCCAGCAAGAATTCGGTTTGGCTGCAGAGGATGCTTTATCCAAGTTAAACAAGGTGGTATCGCTCTTGAGCAGAAAAGGCCATGCGCGGGTTAGAAGGGGGCCTCTTCAAACTCAATCTGCTTCAGGATCTGGTTCTGAACAACTATTTATGGATGGCCCAAACTTCTTGGATTTGGAATCCCCTAAAACTCACGCCTCTGCTTCGATTTACTCATCTTCTTCATCAGATTTTGCTCTTTCACAATGTGTCAAGCAGTTTTTACCTTGTCAGAGCTCTTCCTCAGGTGTCCTAAGCGCGGACACTAACCGGCATCAGCAGTTACATCCGCAGATGCACTATCCACCACTGCAGCTTCAACATCTTAGTCCACAAGCGGAAGTCATGTTTAGAAATGGCTACATGCAATTAGACAACTCAATGAGCTGCACAGCAACAATTTCTTCAACAAAGTCATTTGTGTCATCTTTAAGCATGGATGGCAGTATTGCTAATGACAAGCAACTGTTGCAGTACCAGTCAATTTCTGCAGCCCAGGAACGGATCCCTGGTGCCTCCTCTAAGAGGAAATGTTCCGGTAAAGGTGATGACAGCAGTAAATGTGGAAGTACTGGAAGGTGCCACTGCTCCAAACGGAGGAAGCTACGAGTGAAGCGTACTATTAGAGTGCCTGCTATTAGTAGCAAATTAGCGGACATTCCACCAGATGAATTTTCCTGGAGGAAATATGGTCAAAAACCAATCAAGGGCTCTCCACATCCCAGGGGTTATTACAAGTGCAGCAGTATGAGAGGCTGCCCTGCCAGGAAACACGTGGAGCGTTCCTTGGAAGATCCTTCTATGTTGATTGTGACATATGAAGGCGAACATAACCATTCACGTTTGCTATCATCGAATTCAAGTCTGATAGTTCACCCATAG___ATTCCCATGCAGTATTTTGCTATTTTGGCTGCATAGGTTACTCCTGCAACAATAACACGAAGGCGGCAAATTTCTAATGTGGATGTTAAATCCATTGTGGGCAGTACAAAGTGCAATCCTTGAGGCAAAATTAACACTGCAATTCTTTGAAGGAACTTGCCCATGGGTTAGGAAGTGATTTTCACAATTTTGATCCACACATTCACTGTTCATATTTGATTTGTTAGGACAAAGGTATAGTCAAGGCGTACAGGATAGCAAAAGCTTTGTCAGATACAGACTGCAGTATAATGTATTGATGAGTTCTGTACCTTAAATGCAAGGCCTTCGCTGCCACAAGACTTTCTGTCCAAGGTCTTATTGAATATTGGCCGTCTGAACCCACATATTTGTGGTTGTAAATTAAAGCAGAGTAAAAATGATAAACTTCCTCTACCTTGCTTTTTTAATTCTCCTTTTCGTTAAAATTAATGATGCAGTTTAACTGCCATCTTTGATAAC

Fln Alignment:

Contig19202___MASKLYMKQRIMDPVNISLSLNIQRDRDVQIMSRAGLDSAQRMVSILSXXXXXXXXXXXXXEFGLAAEDAXXXXXXXXXXXXRKGHARVRRGPLQTQSASGSGSEQLFMDGPNFLDLESPKTHXXXXXXXXXXXXXXXXQCVKQFLPCQSSSSGVLSADTNRHQQLHPQMHYPPLQLQHLSPQAEVMFRNGYMQLDNSMSCTATISSTKSFVSSLSMDGSIANDKQLLQYQSISAAQERIPGAXXXXXXXXXXXXXXXXXXXXRCHCSKRRKLRVKRTIRVPAISSKLADIPPDEFSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERSLEDPSMLIVTYEGEXXXXXXXXXXXXXIVHP
D5ADG5_______________MASNLYMKHGIMDPVNISLSLNIQRDRDVQAMTRAGLESAQRMVSILSQKHHKHQQEQVQQDFGLAAEDALSKLNKVVSLLSRKGHARVRRGPLQTQSTAGSGSEQLFMDGPNFLDLDSPNPHASASIYSSSSSDFALSQCVKQFLPCQSSSSGVLSADTNRHQQLHPQMHYPQLQLQHLSPQADVMFRNGYMKLDNSMSCTPTLSSTKSFISSLSMDGSIANDKQLLQYQSISAAQERIPGVSSKRKCSGKGDDSSKCGSTGRCHCSKRRKLRVKRTIRVPAISSKLADIPPDEFSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERSLEDASMLIVTYEGEHNHSRLLSSNSSLIVHP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain