SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene19182

Length: 1674 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene19182

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Rab family GTPase n=1 Tax=Selaginella moellendorffii RepID=D8RW79_SELML	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Sma3	Putative uncharacterized protein	-	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G46060.1	ARA3, ARA-3, ATRABE1C, ATRAB8A, RAB8A RAB GTPase homolog 8A chr3:16917908-16919740 FORWARD LENGTH=216	83%
RefSeq	Arabidopsis thaliana	NP_001078248.1	Ras-related protein ARA-3 [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002315241.1	predicted protein [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ71

Fln msg:

Fln protein: MAAATGRARADYDYLVKLLLIGDSGVGKSCLLLRFTDDSFTTSFITTIGIDFKIRIFELDGKRIKLQIWDTAGQERFRTITTAYYRNAMGILLVYDVTDESSFNNIRNWIKNIEQHASDNVNKILVGNKADMDQSKRAVSTERGQALADEYGIKFFETSAKTNINVEQAFFSIAKDIMKRLSETDFRPAPQAITINNPNTAEGPASASSKSRCCSS*

Protein Length: 218

Fln nts: ATGGGGAGGGTGCCCAGTGCATACAAAGCCGAGGATGCCATTTATCAAACCAAGGATTGAGTCAAACCACAAGTGTCTGGACCAGGGTTGGGAAGCCGTGATATGGGCAGAGGCTTTGGGAACTTTGGCTTTTGTGCGATAGGTAGAGCGCGACTTCTAAGGAGTAGCAGCTGCGTACCAAATTGACCTATATAAAAGGCCTGCGCTGGCACGGCGAGGGCTTGAGTTCGAATATGTTGCACGGATTTTTCGGTTCGTCTTGCAAGGCATAAGAAGCCAAACAGAATCAGCAGCAACAACAAAAGAAGGCAAAGACAAGCGAGTTTTGTTGGG_-_ATGGCTGCGGCAACAGGAAGAGCTCGGGCCGATTACGATTACCTCGTCAAGCTGCTATTGATAGGGGACAGTGGTGTTGGAAAGAGTTGTCTCCTCTTACGTTTCACTGATGACTCTTTTACCACAAGTTTCATCACCACCATAGGAATTGACTTTAAGATCAGGATATTTGAGCTTGATGGGAAGCGGATTAAATTACAGATCTGGGACACTGCTGGTCAAGAGCGTTTCCGGACAATTACAACAGCATACTATCGGAATGCTATGGGTATTCTTCTGGTGTACGATGTCACGGATGAATCATCATTTAACAACATTCGAAACTGGATAAAGAATATTGAGCAGCATGCCTCTGATAATGTGAACAAAATACTGGTTGGCAACAAGGCTGATATGGATCAGAGTAAGAGAGCTGTCTCAACTGAACGCGGTCAAGCACTTGCAGATGAGTATGGCATTAAGTTTTTTGAAACCAGTGCCAAAACAAACATTAATGTGGAGCAGGCCTTCTTTTCAATTGCAAAAGATATTATGAAGAGGCTTTCTGAAACTGATTTTAGGCCTGCGCCTCAGGCTATCACAATCAACAATCCAAACACAGCAGAAGGTCCTGCGAGTGCTTCATCGAAATCAAGATGTTGCAGTTCTTAG___TGTTGTACAACATTAATTTACGCTACAAGCATTTTTCTGGCTGTGATTGTTGATAATATGTATGAGGCTGATGCCATAAAGTACAATGGGAATGAATGTTATTTTAATCAAGCCCTTAATTAGTTAATTGGTAGCTGTGCAGCATGGTGAACCTTACTGGTCGATGTGAGCTGCTTCCCTCATACATATATAGTGTACTGGCATGATATCGTGGAAAGCTTGAATCAATCACCCATTATTTTCCGCTTCATCTACAGTCTTCTTTGTTAGATCTCCTTTTAAGGAATTGGGTACTTTTATTGATATCGTGTGCTGCATGATATCTAAAAGTCTGATTACATTAGCAATATTTTTCTTGTACAAAGTAGCTCTATTTCTTCTCTGGTTACAGGTGTTCTGATCCTTAACTGAAATATTGCCTGGAACTGTTTTATGTTCCTATGGCCTACTTCTTTACAACAACTATGATGAAGTTGCAAGGTGAATTTTCCTTCAGATTAATAATGCCAATATGATCTGGGTATTGAATGCCAGACGTGAGACACTAACATATCATTTCTTATCTATTTTAATGAACTTTACAATGGTAATACAGCTTAGTGACTAGAGGCCCTCGGCCAAGTTCCCAGTGTGTATTTGACAGCATGGTTACTGCAAAATGCATTTAATATATGATACATTTTTACCTTG

Fln Alignment:

Contig19182___MAAATGRARADYDYLVKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRIFELDGKRIKLQIWDTAGQERFRTITTAYYRNAMGILLVYDVTDESSFNNIRNWIKNIEQHASDNVNKILVGNKADMDQSKRAVSTERGQALADEYGIKFFETSAKTNINVEQAFFSIAKDIMKRLSETDFRPAPQAITINNPNTAEGPA
C0PQ71_______________MAAATGRARADYDYLVKLLLIGDSGVGKSCLLLRFTDDSFTTSFITTIGIDFKIRIFELDGKRIKLQIWDTAGQERFRTITTAYYRNAMGILLVYDVTDESSFNNIRNWIKNIEQHASDNVNKILVGNKADMDESKRAVSTARGQELADEYGIKFFETSAKTNINVEQAFFSIAKDIMKRLSETDFRPAPQTITINNPNTAEGPA

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
39	25		75		0.996473
134		25		75	0.996473
146		25		75	0.996473
1675		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain