SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene19022

Length: 794 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene19022 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glucosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SCH3_RICCO	-	-	2.0e-32	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Putative glucosyltransferase	-	-	3.543e-06	-

Source	Gene names
Sma3	At2g28080; At2g36970; CtGT4; DcT11; GSVIVT00008150001; GSVIVT00013563001; GSVIVT00023233001; LOC_Os10g30560; Os10g0442300; OsI_33780; RCOM_0472870;

Source	GOs	Term	Type	e value	Identity
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	0.0	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G36970.1	UDP-Glycosyltransferase superfamily protein chr2:15529050-15530712 FORWARD LENGTH=490	6.0e-37	52%
RefSeq	Arabidopsis thaliana	NP_181234.1	UDP-glycosyltransferase-like protein [Arabidopsis thaliana]	8.0e-37	52%

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
128	20			80	0.995493
158	14	85			0.993533
159		85	14		0.993533
161			14	85	0.993533
162	14	85			0.993533
166		14	85		0.993533
168	14			85	0.993533
171	83		16		0.994512
313	25	75			0.996473
314		25		75	0.996473
316		75		25	0.996473
472		33		66	1.0
557	50		50		1.0
605	40			60	1.0
612			40	60	1.0
615	60		40		1.0
616	40		60		1.0
617		40		60	1.0
619		40	60		1.0
621		40	60		1.0
622			60	40	1.0
623	60		40		1.0
624		60	40		1.0
625			40	60	1.0
631		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain