SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18998

Length: 1544 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18998

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peroxidase [Arabidopsis thaliana]	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	Peroxidase	-	-	1.31e-27	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Phenylalanine metabolism	00360	%
Sma3	Methane metabolism	00680	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	23.t00005; 40.t00030; AT4G37530; At1g24110; At1g71695; At2g18980; At2g34060; At3g28200; At3g49960; At4g17690; At4g25980; At4g30170; At4g37520; At4g37530; At5g14130; At5g40150; At5g47000; At5g51890; At5g64120; At5g67400; B1386G10.20; F14M9.7; F14O23.6; F19

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	respiratory burst	GO:0045730	Biological Process	-
Sma3	rhythmic process	GO:0048511	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Uncharacterised protein family UPF0120	IPR005343	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Lariat debranching enzyme, C-terminal	IPR007708	-	-
Sma3		IPR017909	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G47000.1	Peroxidase superfamily protein chr5:19069171-19070175 REVERSE LENGTH=334	55%
RefSeq	Arabidopsis thaliana	NP_568674.1	peroxidase 65 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002310058.1	predicted protein, partial [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAS6

Fln msg:

Fln protein: MTMHSSSSNSNGSLWMVVMVLTVTAQLVLAQQQQLLSVDYYNSSCPQLESIIFKVMVRKQRANPTTAAGTLRIFFHDCFVEGCDASVLVSSMGAGHKAERDADINLSLPGDGFDAVARAKTAVEAQCPGVVSCADILTIATRDLITLVGGPKYQVKKGRKDGLVSEASRVAGNLPEATMSVDELNALFESKGFNQSEMTTLSGAHTVGFSHCKEFMGRIYKEPMDPTIDPHYAVGLQNVCPQQNLDPNMAAFNDVLSPRTFDNVFYQNLPKGLGLLASDQILYTDARTRGLVETYASDQNAFFRDFAIAMDKLGSVGVKTGYEGEIRKSCDAFNKHS*

Protein Length: 339

Fln nts: CGTCGTGACCTTGGCTGTCACATCTCACGCGGACCGATCCTTCTTGAAGGCCATGCCAGTGCCTTTACCAGTTGCCATTCCAATCCCCGTTGCTGTTGCCATTGCCATTGCCATTTTCTGACCCCATATTCCCATTGAAAGTTGCAGAATCACAAGTTAACAAG_-_ATGACAATGCACAGCAGCAGCAGCAACAGTAATGGCTCTCTGTGGATGGTGGTCATGGTCCTAACAGTAACAGCACAGCTGGTTCTTGCTCAACAGCAACAGTTGCTCTCTGTGGATTACTACAACTCGTCGTGCCCGCAACTGGAAAGCATCATTTTCAAGGTAATGGTGCGCAAGCAGAGGGCCAACCCAACCACAGCAGCGGGGACTCTACGCATTTTCTTCCATGACTGCTTTGTTGAAGGGTGCGATGCATCGGTGCTGGTGTCGTCGATGGGTGCTGGTCACAAGGCGGAGCGGGACGCAGACATCAATCTGTCATTGCCCGGCGACGGATTCGACGCTGTCGCCCGAGCAAAGACAGCGGTCGAAGCTCAGTGCCCTGGTGTCGTCTCATGTGCAGACATTCTCACCATTGCAACCAGAGATCTCATTACTCTGGTAGGGGGGCCGAAGTACCAGGTCAAGAAGGGGCGCAAAGATGGTCTTGTCTCTGAAGCCTCTCGAGTTGCAGGCAATCTCCCAGAAGCAACGATGAGCGTGGACGAGCTAAACGCCTTGTTCGAATCCAAGGGCTTCAATCAGTCGGAAATGACAACGCTATCAGGAGCTCACACCGTGGGCTTCTCGCACTGTAAGGAGTTCATGGGGAGGATCTACAAGGAACCCATGGATCCCACCATCGATCCTCACTACGCTGTGGGCCTGCAAAACGTCTGCCCCCAGCAGAACCTCGATCCCAACATGGCCGCCTTCAACGATGTCCTTTCTCCCAGGACTTTCGATAATGTTTTCTATCAGAATCTGCCAAAGGGTTTGGGCTTGCTGGCCTCTGATCAGATCCTCTACACCGATGCTCGGACCAGGGGCCTCGTGGAAACATATGCTTCCGACCAAAATGCTTTCTTCCGGGACTTTGCAATTGCCATGGATAAGCTCGGCAGCGTGGGCGTTAAAACAGGCTACGAGGGAGAGATCAGAAAGTCCTGCGATGCTTTCAATAAACACAGTTAG___ATAATCGTTATATACCCTCTTTGTCTGCCTGAGTGTAAATATAATCTCTCTGGTGTACGTTATTTCCTAACCACAACGTCTGGATAGCAGGTTAGAGTTCCCTGAGATGGGCCAGTGATTATACTTATACTGTACACCTAAAATTTCAAACGGCTCGTCTTTATATTTTTTTCTGAGAAAATTGATTTGTTGTAGAAGACCCAACAATAAACTCTGGGCTGTTTTGAGCCTATTGAAGCAGCACTTGATTGGTTTGCATTCCAACAATAAACTTTGAGCTGATTTAAGCTTATTAATGAAGCATCATTTGATTGATTTGCATCCTAAATTTGTTCTCTCTTTTCTTTGCGAACTCTGTTAATGCAA

Fln Alignment:

Contig18998___SVDYYNSSCPQLESIIFKVMVRKQRANPTTAAGTLRIFFHDCFVEGCDASVLVSSMGAGHKAERDADINLSLPGDGFDAVARAKTAVEAQCPGVVSCADILTIATRDLITLVGGPKYQVKKGRKDGLVSEASRVAGNLPEATMSVDELNALFESKGFNQSEMTTLSGAHTVGFSHCKEFMGRIYKEPM----DPTIDPHYAVGLQNVCPQQNLDPNMAAFNDVLSPRTFDNVFYQNLPKGLGLLASDQILYTDARTRGLVETYASDQNAFFRDFAIAMDKLGSVGVKTGYEGEIRKSCDAFN
D5AAS6_______________SVDYYQKTCPQVENIVRAEMIRKQAANPTTAGGTLRIFFHDCFVEGCDASVLISST-PDNKAERDAEINLSLPGDGFDAIARAKTAIEAKCPGTVSCADIISMATRDLISLIGGPYYPVKKGRKDGRISKAWRVAGNLPLPTMNVDRLTALFGSKGLTQAEMITLSGAHTVGFTHCKEFLHRIYSYNMTTHIDPTMNFQYAMALRRACPRVNLDPTIVVFNDVNSPRQFDNGFYRNLPQGLGLLGSDQILYTDPRSRVLAQRYASDQATFFDAFVAAMDKLGSVGVKTGTQGEVRRTCDAFN

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
203		75	25		1.0
215			10	90	0.90298
235	70		30		1.0
275		66		33	1.0
276			33	66	1.0
310			88	11	0.923564
383			16	83	0.994512
425			12	87	0.992554
515		90		10	0.90298
645	88		11		0.923564
681		85		14	0.993533
714		14	85		0.993533
715	14	85			0.993533
717	85			14	0.993533
768	83	16			0.994512
786			80	20	0.995493
852		50		50	1.0
981		25		75	0.996473
991		75		25	0.996473
1112	25			75	0.996473
1228		11		88	0.923564
1256		88		11	1.0
1269			77	22	1.0
1330		65		34	1.0
1336	36		63		1.0
1340		57		42	1.0
1346	20			80	0.999996
1379		53		46	1.0
1483			25	75	1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
96	115	TTGCCA TTGCCA TTGCCA TT	20
176	189	CAG CAG CAG CAG CA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain