SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18926

Length: 1108 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18926

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mannan endo-1,4-beta-mannosidase 6 [Arabidopsis thaliana] sp\|Q9LZV3.1\|MAN6_ARATH RecName: Full=Mannan endo-1,4-beta-mannosidase 6; AltName: Full=Beta-mannanase 6; AltName: Full=Endo-beta-1,4-mannanase 6; Short=AtMAN6; Flags: Precursor emb\|CAB82763.1\| (1-4	-	-	0.0	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	(1-4)-beta-mannan endohydrolase	-	-	4.316e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Mannan endo-1,4-beta-mannosidase.	EC:3.2.1.78	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fructose and mannose metabolism	00051		0.0	%

Source	Gene names
Sma3	At1g02310; At2g20680; At3g10900; At3g30540; At4g28320; At5g01930; At5g66460; F26K10.200; F5H14.35; GSVIVT00010891001; GSVIVT00014580001; GSVIVT00018590001; GSVIVT00024894001; GSVIVT00032044001; GSVIVT00032045001; GSVIVT00032046001; GSVIVT00032047001; GSVI

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	mannan endo-1,4-beta-mannosidase activity	GO:0016985	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Glycoside hydrolase, family 5	IPR001547	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G01930.1	MAN6, AtMAN6 Glycosyl hydrolase superfamily protein chr5:361189-362867 REVERSE LENGTH=448	53%
RefSeq	Arabidopsis thaliana	NP_195813.1	mannan endo-1,4-beta-mannosidase 6 [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002323680.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9Z9

Fln msg: Separated hits, possible frame ERROR between 124 and 130, your sequence is shorter than subject: 262 - 429

Fln protein: WVINVAYKDDPTIFAWELMNEPRCLSDPSGDTLQEWIQEMxxxVKSIDPKHLLEIGVEGFYGPSSPDRAIFNPNSFAQQVGTDFIRNHQALGIDFASVHIYPDSWISQSISAAHLSFARNWTMSHIRDCEKTLKMPVVFAEFGTSSRDPGYTSSYRDTFIQNVYESILASARKGGAGAGSLIWQLFPEGVDQLNDGYEVVLSKSPSTAKVLKEQSVALWELSSMCQWSFKWSCRREIVSAPRFSSLDGDVLMGWPDPVSEL*

Protein Length: 263

Fln nts: ATGGGTGATCAACGTTGCATACAAGGACGACCCAACCATATTTGCCTGGGAGCTCATGAACGAACCTCGCTGCCTGTCTGATCCCTCCGGTGACACGTTACAGGAATGGATTCAGGAGATGGCxxxxxxAGTGAAATCTATTGATCCTAAGCATCTGTTGGAGATTGGTGTTGAAGGGTTCTATGGACCTTCAAGTCCGGACAGAGCTATATTCAACCCTAACAGTTTTGCTCAGCAAGTAGGCACAGACTTCATAAGGAATCACCAAGCACTGGGCATTGATTTTGCCTCTGTACATATTTATCCAGACAGCTGGATTTCCCAATCCATATCTGCAGCTCACCTGTCATTCGCTAGAAACTGGACCATGTCACACATCCGAGACTGCGAGAAGACTTTGAAAATGCCTGTTGTGTTTGCAGAGTTTGGGACATCAAGCAGAGATCCAGGTTATACCAGCAGCTACAGAGACACCTTCATACAGAATGTGTACGAGAGCATTCTAGCATCGGCTAGGAAGGGAGGAGCTGGTGCAGGAAGCCTGATTTGGCAGCTATTTCCCGAGGGCGTGGACCAGTTGAACGATGGGTATGAGGTGGTTCTTTCCAAGAGTCCCTCCACGGCCAAGGTCCTGAAAGAGCAGTCGGTGGCCCTGTGGGAGCTGAGTTCTATGTGCCAGTGGAGCTTTAAGTGGAGTTGCAGAAGGGAGATCGTTAGTGCTCCTCGTTTTTCTTCACTGGATGGTGATGTGCTCATGGGGTGGCCTGACCCTGTGAGTGAATTGTGATTGGTTTCATGAACAGGGGGTTGAATAAATGGTTAAAAAAGATAATTGGGTAAAGTTGGACCAGGGGCTTTGCATCGGGCAACCGATGCTGTGCTATGGGGTTGTATGCGTTGGTTATTGGATTTAAGTAAGTATATTATTTAATGGTGGGATATATAGCTTCACGCATTAATGGGTCAATAACATTGTAAATATTGGTTGTATTTGTGTAAGACTTCCCATATAACAAGTCACGAGCTTATTAATATGGGTCAATAGCATTGTAAATATTGGTTGCCATTGTGTAAGACCTCCCATCTGATGAGCCACGAGCTCACTTAAG

Fln Alignment:

Contig18926___VINVAYKDDPTIFAWELMNEPRCLSDPSGDTLQEWIQEMAxxVKSIDPKHLLEIGVEGFYGPSSPDRAIFNPNSFAQQVGTDFIRNHQALGIDFASVHIYPDSWISQSISAAHLSFARNWTMSHIRDCEKTLKMPVVFAEFGTSSRDPGYTSSYRDTFIQNVYESILXXXXXXXXXXXXLIWQLFPEGVDQLNDGYEVVLSKSPSTAKVLKEQSVALWEL
D5A9Z9_______________ISGVEYRNEPAIFAWELVNEPRCTSDASGQTLQTWISEMAxxIKSLDSRHLLTVGLEGFYGKTTPNKIELNPGDWAVSLGSDFIWNSQVEEIDFASVHAYPDSWIPNVDLEDHLNYFSKWVTSHIDDGEQILKKPVLFTEFGLSSHHKGFEQSHRDRLFKTMYEEIDESARKGGAGGGALIWQFVVEGMEEYGDEFAFVPWQFPSTHKLIVEQSCRLQTL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
504		75		25	0.996473
658	16		83		0.994512
726	20	80			0.995493
947	33		66		0.997452
955		66		33	0.997452
991	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain