SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18815

Length: 2155 nt

UniGene Fasta

>sp_v3.0_unigene18815
GGAGATCATATATGATAGAAAACTAAAACCTCCGAAGAAGTTGCTGCTTCTTTCCTATAAACCTTTACCTTTACCATCGTGACCTTGGCTGTCACTCTTCAAAATTTTAGCATCCTGTCGTTCGATCAATGGCTGCAGCTGCAGTTGGATGGCGAAGTGTCTCACGATGGATTCATGGCAGCAGCAGGACCACGACACTGAAAGCTCAGAGCAATGCGCCTTACGCCAGGAAGTTGTCTGCGACCTCCTCCTCCGATACTTCATCAGATGTGGAGAAGGGCAACGAAGAAGGCGGAGGAGGGATGGGGATTCCATCTTTCAATGATCTCAAACAGAGTCTCGAACAAAGCAAAAGCAACAGTAGTCATCATCAATCCAAAGAAGAAGAAGATCCCAAAATAAAACACTTTGAGGATGTCAAGGCAAGTCTTCGAAATCCCATTCCTCGACGAAAGCAACCCCAGCCTCTTTCTCGAACCCTCCCCGGACAATCCACGAATTTTGGTGATCACGCGGTATTTTCAGACCACAAGCCGAGTGTCGCATCACTGGATGAGATACGTAAGAATCTGTCAGAGTTTCGAATGAAATCTGCAGCACCTACTACCTTCCAGAGATCACCCCCAAAAAGCTATTCTTCAAATGATCAGGCCGCCGGGGTTTCATTTCAAGCTCTCTACGAGAGCAGCAAAAATAACAATAATAAGCAGGAGCAGGAGCGGCAGCAGAAAGGCAAAGAGAGGTTATCTTTCCAAGCAATCCGAGAAAGTCTTCAGCAGCTCCGTTCCAATAAAGCTAAGGAGAGCAATGAATCTTTGGGTTCCTTTTCACTCAAAGCCTTTGGAGAGAGTCTCAGATTGCAGCCTGGTGGAGGTGGGGCAGCTCCTCCTCCTTCTTCTCTTCCTTCATCTGTGTTTGGGAGGGAAATGCGCGAAAAGGTGGGCGGAGATTCTCAGCCTACAGCAGCAAAAACAGAGTTTATGAAGTTGTATAGCTACGAAGAATTGGGAGATAAACTCAGGAAACTCCGTCCAGATGTCCAACACGAGGAAAAGAAGGGGTCGGGGTTTTCCCTCAGGGAGCTCAACGAGAGGCTGCAGAAATTGCGTGAAATAGAAGAGAAGGAAACGGAGTCGAAGATTGGTGGAATTTCGTTCAAAGATTTGAGGGAAAGCCTTGTACAATTGCGCATGACTACAGAGAGTTCCAACAAAAAATCATCACTGCAGAGATTGGCTTTGCTGGGACAACTGGGAGGGCAGGTAACACCAAATTTCATGCTGCAGCCTCCAAAGGATCATTTGATTGAACAGTACTTCCATCCTGATAATATGTCTTCAGAAGAGAAGCTCAAAATAGAATTGAAGAAGGTCAGAGAAAAATTTAGAATGAATGAAGCAGATTGTGGATCATCACGTGTCCAAGTTGCTCAACTTACAACAAAAATCAATCACTTGTCTCAATTACTACATAAGAAGGATAAGCATTCTCGGAAAGGTCTTGAGGCAATGGTTCAAAGACGGAAGAAGCTGCTTAAATATCTTCGGCGCACTGATTGGGATTCTTACTGCTTTCTTCTTTCTCAGCTAGGACTGAGAGATAATCCAGATTACAAAACCTAAACTTTATAAATCAAAATGTTTCAATCTTGTGTTCAGGGAAGACAGTCGAGGTATTCAGAAGGTAAAGCCCCTATGTTAATATGGGCAACATAAAGTTGTGGTCTGGACAAGTCCCTAGTTCCTTGCAACTATATTGTCCATGGAGTCCCATAACCATACCAATTTATTTTGAGATTTGCAAGACATCTTTTTGCGAAGGCAAATCTTAGCCATCAGGTGTATAGAGTTACACATCTCATGCCAACAGGTTGAGTGTGATTATGTCTTTCTGCAAAGTCCAAAGGTTGCCCCTTTTTCTGTGTTTTGTAAATGTTGAAAGGTGGAGCAACTTCATTTGAATTTCTCAAAATACATTTTTCTGATCAAAGTACTGGAATCTAACTTCTTCTATGATTGGAAGGAGAAGCCATTGGCTTTTCATCTTATTAAAAATGGAAGGAAACCAACTATGCTGATGACTAACAATACATTCCATTAGGTGATTTCTCATCTTTAATAACTGCCTATGATGTATTTGTACTTAACTTGATTAC

Ace file of the UniGene sp_v3.0_unigene18815

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	S15/NS1, RNA-binding protein [Arabidopsis thaliana] gb\|AAF82151.1\|AC034256_15 Contains similarity to an unknown protein T21F11.5 gi\|6730725 from Arabidopsis thaliana BAC T21F11 gb\|AC018849 and contains a Ribosomal Protein S15 PF\|00312 domain gb\|AAK32782.1	-	-	0.0	37%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	55%
Sma3	Chromosome undetermined scaffold_108, whole genome shotgun sequence	-	-	7.92e-09	-

Source	Gene names
Sma3	At1g15810; At1g80620; F7H2.15; GSVIVT00000766001; GSVIVT00000772001; GSVIVT00000791001; GSVIVT00000792001; Os02g0803200; OsI_09325; OsI_21884; OsJ_08758; OsJ_20322; P0015E04.23; P0015E04.36; P0689B12.23; PHYPADRAFT_170717; POPTRDRAFT_817568; RCOM_0010710;

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Ribosomal protein S15	IPR000589	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Ribosomal protein S15, bacterial-type	IPR005290	-	-
Sma3	S15/NS1, RNA-binding	IPR009068	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002303830.1	predicted protein [Populus trichocarpa]	0.0	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6I1E7

Fln msg: your sequence is longer than subject: 498 - 444

Fln protein: MAAAAVGWRSVSRWIHGSSRTTTLKAQSNAPYARKLSATSSSDTSSDVEKGNEEGGGGMGIPSFNDLKQSLEQSKSNSSHHQSKEEEDPKIKHFEDVKASLRNPIPRRKQPQPLSRTLPGQSTNFGDHAVFSDHKPSVASLDEIRKNLSEFRMKSAAPTTFQRSPPKSYSSNDQAAGVSFQALYESSKNNNNKQEQERQQKGKERLSFQAIRESLQQLRSNKAKESNESLGSFSLKAFGESLRLQPGGGGAAPPPSSLPSSVFGREMREKVGGDSQPTAAKTEFMKLYSYEELGDKLRKLRPDVQHEEKKGSGFSLRELNERLQKLREIEEKETESKIGGISFKDLRESLVQLRMTTESSNKKSSLQRLALLGQLGGQVTPNFMLQPPKDHLIEQYFHPDNMSSEEKLKIELKKVREKFRMNEADCGSSRVQVAQLTTKINHLSQLLHKKDKHSRKGLEAMVQRRKKLLKYLRRTDWDSYCFLLSQLGLRDNPDYKT*

Protein Length: 499

Fln nts: GGAGATCATATATGATAGAAAACTAAAACCTCCGAAGAAGTTGCTGCTTCTTTCCTATAAACCTTTACCTTTACCATCGTGACCTTGGCTGTCACTCTTCAAAATTTTAGCATCCTGTCGTTCGATCA_-_ATGGCTGCAGCTGCAGTTGGATGGCGAAGTGTCTCACGATGGATTCATGGCAGCAGCAGGACCACGACACTGAAAGCTCAGAGCAATGCGCCTTACGCCAGGAAGTTGTCTGCGACCTCCTCCTCCGATACTTCATCAGATGTGGAGAAGGGCAACGAAGAAGGCGGAGGAGGGATGGGGATTCCATCTTTCAATGATCTCAAACAGAGTCTCGAACAAAGCAAAAGCAACAGTAGTCATCATCAATCCAAAGAAGAAGAAGATCCCAAAATAAAACACTTTGAGGATGTCAAGGCAAGTCTTCGAAATCCCATTCCTCGACGAAAGCAACCCCAGCCTCTTTCTCGAACCCTCCCCGGACAATCCACGAATTTTGGTGATCACGCGGTATTTTCAGACCACAAGCCGAGTGTCGCATCACTGGATGAGATACGTAAGAATCTGTCAGAGTTTCGAATGAAATCTGCAGCACCTACTACCTTCCAGAGATCACCCCCAAAAAGCTATTCTTCAAATGATCAGGCCGCCGGGGTTTCATTTCAAGCTCTCTACGAGAGCAGCAAAAATAACAATAATAAGCAGGAGCAGGAGCGGCAGCAGAAAGGCAAAGAGAGGTTATCTTTCCAAGCAATCCGAGAAAGTCTTCAGCAGCTCCGTTCCAATAAAGCTAAGGAGAGCAATGAATCTTTGGGTTCCTTTTCACTCAAAGCCTTTGGAGAGAGTCTCAGATTGCAGCCTGGTGGAGGTGGGGCAGCTCCTCCTCCTTCTTCTCTTCCTTCATCTGTGTTTGGGAGGGAAATGCGCGAAAAGGTGGGCGGAGATTCTCAGCCTACAGCAGCAAAAACAGAGTTTATGAAGTTGTATAGCTACGAAGAATTGGGAGATAAACTCAGGAAACTCCGTCCAGATGTCCAACACGAGGAAAAGAAGGGGTCGGGGTTTTCCCTCAGGGAGCTCAACGAGAGGCTGCAGAAATTGCGTGAAATAGAAGAGAAGGAAACGGAGTCGAAGATTGGTGGAATTTCGTTCAAAGATTTGAGGGAAAGCCTTGTACAATTGCGCATGACTACAGAGAGTTCCAACAAAAAATCATCACTGCAGAGATTGGCTTTGCTGGGACAACTGGGAGGGCAGGTAACACCAAATTTCATGCTGCAGCCTCCAAAGGATCATTTGATTGAACAGTACTTCCATCCTGATAATATGTCTTCAGAAGAGAAGCTCAAAATAGAATTGAAGAAGGTCAGAGAAAAATTTAGAATGAATGAAGCAGATTGTGGATCATCACGTGTCCAAGTTGCTCAACTTACAACAAAAATCAATCACTTGTCTCAATTACTACATAAGAAGGATAAGCATTCTCGGAAAGGTCTTGAGGCAATGGTTCAAAGACGGAAGAAGCTGCTTAAATATCTTCGGCGCACTGATTGGGATTCTTACTGCTTTCTTCTTTCTCAGCTAGGACTGAGAGATAATCCAGATTACAAAACCTAA___ACTTTATAAATCAAAATGTTTCAATCTTGTGTTCAGGGAAGACAGTCGAGGTATTCAGAAGGTAAAGCCCCTATGTTAATATGGGCAACATAAAGTTGTGGTCTGGACAAGTCCCTAGTTCCTTGCAACTATATTGTCCATGGAGTCCCATAACCATACCAATTTATTTTGAGATTTGCAAGACATCTTTTTGCGAAGGCAAATCTTAGCCATCAGGTGTATAGAGTTACACATCTCATGCCAACAGGTTGAGTGTGATTATGTCTTTCTGCAAAGTCCAAAGGTTGCCCCTTTTTCTGTGTTTTGTAAATGTTGAAAGGTGGAGCAACTTCATTTGAATTTCTCAAAATACATTTTTCTGATCAAAGTACTGGAATCTAACTTCTTCTATGATTGGAAGGAGAAGCCATTGGCTTTTCATCTTATTAAAAATGGAAGGAAACCAACTATGCTGATGACTAACAATACATTCCATTAGGTGATTTCTCATCTTTAATAACTGCCTATGATGTATTTGTACTTAACTTGATTAC

Fln Alignment:

Contig18815___HFEDVKASLRNPI-PRRKQPQPLSRTLPGQSTNFGDHAVFSDHKPSVASLDEIRKNLSEFRMKSAAPTTFQRSPPKSYSSNDQAAGVSFQALYXXXXXXXXXXXXXXXXXXXXXLSFQAIRESLQQLRSNKAKESNESLGS---FSLKAFGESLRLQXXXXXXXXXXXXXXXX-------VFGREMREKVGGDSQPTAAKTEFMKLYSYEELGDKLRKLRPDVQHEEKKGSGFSLRELNERLQKLREIEEKETESKIGGISFKDLRESLVQLRMTTESSNKKSSXXXXXXXXXXXXXVTPNFMLQPPKDHLIEQYFHPDNMSSXXXXXXXXXXXXXXFRMNEADCGSSRVQVAQLTTKINHLSQLLHKKDKHSRKGLEAMVQXXXXXXXXXXXTDWDSYCFLLSQLGLRDNPDYK
F6I1E7_______________YFNDVKASLKQPPQPPRKSSSLFSSSSPSSSPPLSS---------KIASLEEIRKNLSEFRSRSSVPNP---SPSQQSSSSSP---ISFQELYKRNVIPKPEDSPKGK------LSFDAIRESLKQLRPSSSAEGGQTKGKTDVLSLSAFQDSLRLRPVDSGATKSSVVIGGSDDALPMSVFGKDIRDRKEAES--TAMKTSFVKWYGPEELGKKLRELRPETGAE----SCFSLKELNERLMKLREMEEKETESSIPGVSFKDLRESLVRLRMADDEKTKKSSIQRLDILGRLGG--TPSFMLAPPKEHLVEQYFHPDNMSSAEKLKVELKKVRDEFKMSESDCGSARVQVAQLTTKIKHLNSALHKKDKHSRKGLQAMVQRRKKLLKYLRRTDWDSYCLVLSKLGLRDNPNYK

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
76	50		50		1.0
79			50	25	0.995533
81	25		50	25	0.995533
82	75		25		0.996473
83		75	25		0.996473
84	25	75			0.996473
85	25			75	0.996473
87			50	50	1.0
88			50	50	1.0
89		50		50	1.0
91		25	50	25	0.995533
94	50			25	0.995533
95		75		25	0.996473
395		70	10	20	0.999998
397	80		20		0.999996
400	20			80	0.999996
401	88	11			0.923564
402	88		11		0.923564
403	75		25		1.0
404	75	12		12	0.975346
407	12	87			0.992554
408			25	75	1.0
409	12		12	75	0.975346
410		12		87	0.992554
411		12	87		0.992554
413		14	85		0.993533
416		14		85	0.993533
439		83		16	0.994512
440		83	16		0.994512
442			16	83	0.994512
445		83	16		0.994512
446	16			83	0.994512
448	16		83		0.994512
449	83		16		0.994512
451		16	83		0.994512
454	83		16		0.994512
456		83		16	0.994512
457	80	20			0.995493
460		75	25		0.996473
461	25	75			0.996473
490	66	33			0.997452
491	66			33	0.997452
579	20		80		0.995493
581			20	80	0.995493
1301		88	11		0.923564
1302	88		11		0.923564
1303		11		88	0.923564
1824	66	33			1.0
1838		88		11	0.999952
2043		77		22	0.999999
2049	85		14		0.993533
2111		20		80	0.995493
2119	33		66		0.997452
2129		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
379	391	AAG AAG AAG AAG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain