SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18788

Length: 662 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene18788 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa Japonica Group]	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	Tetratricopeptide-like helical	-	-	2.278e-09	-

Source	Gene names
Sma3	At1g06140; At1g11290; At1g20230; At2g13600; At3g26782; At3g29230; At3g46790; At4g02750; At4g13650; At4g16470; At4g18750; At4g33990; B1032F05.19; B1080A02.28; B1358B12.23; CRR2; EMB2758; F17I5.180; F18A5.40; F28A21.160; FCAALL.374; GSVIVT00000138001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	diacylglycerol kinase activity	GO:0004143	Molecular Function	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	lipid binding	GO:0008289	Molecular Function	-
Sma3	deaminase activity	GO:0019239	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	lipid transport	GO:0006869	Biological Process	-
Sma3	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205	Biological Process	-
Sma3	purine ribonucleoside monophosphate biosynthetic process	GO:0009168	Biological Process	-
Sma3	phloem or xylem histogenesis	GO:0010087	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	-
Sma3	mRNA modification	GO:0016556	Biological Process	-
Sma3	chloroplast RNA processing	GO:0031425	Biological Process	-
Sma3	polycistronic mRNA processing	GO:0031426	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease P	IPR000100	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Plant lipid transfer protein/Par allergen	IPR000528	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3		IPR003612	-	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR011523	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G13600.1	Pentatricopeptide repeat (PPR) superfamily protein chr2:5671493-5673586 FORWARD LENGTH=697	50%
RefSeq	Arabidopsis thaliana	NP_178983.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002300569.1	predicted protein, partial [Populus trichocarpa]	49%

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	T %	Probability
424	75	25		0.996473
425	75	25		0.996473
583	66	33		0.997452
584		33	66	0.997452
586	33		33	0.997753
590	33	66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain