SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18765

Length: 1293 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene18765 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TIR/NBS (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J1_PINTA	-	-	2.0e-25	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%

Source	Gene names
Sma3	RGA;

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRB4

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 31 aas, putative chimeric sequence, your sequence is shorter than subject: 118 - 579

Fln protein: LVCGQSECYWEATLDELDKILPHTEIQKSLKISYESLSVDDQQIFLDIASFFIGEDRDVAIRIWALRGFQNLQDKCLLEVDALQTIRMHDHIRDLGRNIAQRLGDPSSLAAIHQRHR*

Protein Length: 119

Fln nts: CGCTTGTTTGTGGACAAAGTGAATGTTACTGGGAAGCGACACTAGATGAACTTGACAAGATACTGCCTCACACTGAGATACAGAAAAGCCTAAAAATAAGTTACGAGTCACTTAGTGTAGATGATCAGCAAATCTTTTTAGACATTGCTTCATTTTTCATAGGAGAAGATAGAGATGTTGCTATAAGAATATGGGCTTTGCGGGGGTTCCAAAATCTACAGGACAAGTGTTTGTTAGAAGTGGACGCATTACAGACAATACGAATGCATGATCACATTCGTGATCTGGGAAGAAATATTGCGCAGAGATTAGGGGACCCGTCGTCTTTGGCAGCAATCCACCAAAGACATCGATGA___TTTGCTGGAGCAATCCTCACTGAGGAAAAAAATGCTTCTTTGACAGCAATCCACCAAATACATTGATGATTTGCTGAAGCAATCCTCACTGAGAAAAAAAATGCTTCTTTGACAGAAATCCACCAAAGACATTGATGATTGCTGGAGCAATCATCACTGATTATGACCGGAGTTCGCGGGATTACGATGCGTGGTTGTAATTATCGTGAATGGAAAGCAACTGAAGAGTTCAGCAACGGCAATGCCTGCTTTCATGATACGAATGGAGAACCTAAGTGTTTTAGAAGTGGCCGGGGACAAGTTGGAAACAGCGTGACAGGGAAATGGGCTCCTCTTGTACCTCTTTTTGAAAGGATGCCGCAATTTGACCTTGTCCAGCACCACGCTTGGAAATATTACGACATTGGAATACTTAGATATCTCAAGCTGTATAAATGTGACAGAATCGCCCCCCAGCTCGAACATCAACAGTCCTTGAAATAATTACACATGGCTGGAGTGAACGAAAAAGAATTGCCCAGCTGGATTGGGAACCTATGGCAATTTAGAAGGTTTGGCAATAGGTGGCTATTCCTTTTTTGCTGACTTACCTCAAGAACTTGAAAATTTTGCTTCGCAGGGAACCGACTAGATTGCAGTACTTGCCCCCATCACGTTCTACGTGAAGAAGAACCTCCATGGAAGCGATCTAAAAAGATTGGAGAGTTGAATAAGTTGGAGTCCTTACATGACAATGACAATGCATGTCTGTGTTCAAGAAATTATCTCTGTTAGCAACAAAATCACAATGACAATGACAAATGCTGGTCTGTGTTCAAGAAATTATCTCTGTTAGCAACAAAATCACAATGACAATGACAAATGCTTGTCGGTGTTCAAGAAATTATCTCTGTTAGAAACAAAAACAAATGCGATAAACTATCCCGTGTATGCTTTT

Fln Alignment:

Contig18765___YWEATLDELDKILPHTEIQKSLKISYESLSVDDQQIFLDIASFFIGEDRDVAIRIW------ALRGFQNLQDKCLLEVDALQTIRMHDHIRDLGRNIAQRLGDPSSL
B8LRB4_______________YWNQQLQKTSKVLP-SDIQRTLQISYDALDEDERQIFLDIACFFIGEDRDTAIKIWEESEWSGELGLWKLENRCLVEVDRENSLRMHDHIRDLGRYMAGISKNPCRL

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
394		85	14		0.993533
440	14			85	0.993533
441	11	88			0.923564
499	18		81		0.999994
602	80		20		0.999996
998		14		85	0.993533
1040	14			85	0.993533
1042		85		14	0.993533
1061	14	85			0.993533
1095	20		80		0.995493
1127		80	20		0.995493
1144	80	20			0.995493
1145		20		80	0.995493
1146		20	80		0.995493
1148	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain