SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18737

Length: 513 nt

UniGene Fasta

>sp_v3.0_unigene18737
GCAGCTTCTGGGAAAGCCGTCGTGACCTTGGCTGTCACTCATTCTTGTACGCATCGCAAAATAAAGTTCACCCGACTGGAGGTTACCCGCCAGGAATCGGAACCAAAAACGCTCTATTAGTGATGGGTGCAGTAAATGCACTGGGCTTCCTTTTTACGTTTTTGGTACCTGAAACCAAGGGCAAGTCGCTGGAGGAACTGTCGGGGGAGAACGAAGAAGAAGGAAATGGATCGTCCGATCGATCGAACAGAACTATACCCGTGTAGTCACGGTGACATAATTGATATCTGACGCATGCCATTACTCGCCAGGCAGGAAAGTGTGTGTTCTGTAGTAAAAAACTAGTTGTGTGTTCTGTAGTCAAAAACTAGTTGTTATGTTCCTGTGTTTATTTGGATGGCAGAAAAGTTGTGCGAGATTGTGTTTGTAAGATATCGAGATACCTACCTCGAGATCTAAAAGTCGTTTGTATAGATTTCCATCTCCTCTGTAAGAGCAACTGGTGGAAGTTTG

Ace file of the UniGene sp_v3.0_unigene18737

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative phosphate transporter n=1 Tax=Eucalyptus camaldulensis RepID=Q1JUI9_EUCCA	-	-	3.0e-11	60%
FL-Next	tr=Putative phosphate transporter; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	54%
Sma3	Phosphate transporter	-	-	2.772e-36	-

Source	Gene names
Sma3	APT1; APT2; At2g38940; At3g54700; At5g43350; At5g43360; At5g43370; EcPT2; EdPT1; GSVIVT00020254001; GSVIVT00020255001; GSVIVT00020257001; HORvu; LOC_Os10g30790; LePT1; LePT2; LjPT1; LjPT2; LjPT3; MWF20.4; MWF20.5; MWF20.6; MtPT1; MtPT6; NtPT2; NtPT3; NtPT

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	inorganic phosphate transmembrane transporter activity	GO:0005315	Molecular Function	-
Sma3	symporter activity	GO:0015293	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	phosphate ion transport	GO:0006817	Biological Process	-
Sma3	cellular response to phosphate starvation	GO:0016036	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Phosphate permease	IPR004738	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G43370.1	" APT1, PHT2, PHT1;2 phosphate transporter 2 chr5:17416074-17417798 FORWARD LENGTH=524"	3.0e-14	60%
RefSeq	Arabidopsis thaliana	NP_001190462.1	putative inorganic phosphate transporter 1-2 [Arabidopsis thaliana]	4.0e-14	60%
RefSeq	Populus trichocarpa	XP_002337427.1	high affinity inorganic phosphate transporter, partial [Populus trichocarpa]	1.0e-13	56%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q1XG57

Fln msg: your sequence is shorter than subject: 88 - 544

Fln protein: SFWESRRDLGCHSFLYASQNKVHPTGGYPPGIGTKNALLVMGAVNALGFLFTFLVPETKGKSLEELSGENEEEGNGSSDRSNRTIPV*

Protein Length: 89

Fln nts: GCAGCTTCTGGGAAAGCCGTCGTGACCTTGGCTGTCACTCATTCTTGTACGCATCGCAAAATAAAGTTCACCCGACTGGAGGTTACCCGCCAGGAATCGGAACCAAAAACGCTCTATTAGTGATGGGTGCAGTAAATGCACTGGGCTTCCTTTTTACGTTTTTGGTACCTGAAACCAAGGGCAAGTCGCTGGAGGAACTGTCGGGGGAGAACGAAGAAGAAGGAAATGGATCGTCCGATCGATCGAACAGAACTATACCCGTGTAG___TCACGGTGACATAATTGATATCTGACGCATGCCATTACTCGCCAGGCAGGAAAGTGTGTGTTCTGTAGTAAAAAACTAGTTGTGTGTTCTGTAGTCAAAAACTAGTTGTTATGTTCCTGTGTTTATTTGGATGGCAGAAAAGTTGTGCGAGATTGTGTTTGTAAGATATCGAGATACCTACCTCGAGATCTAAAAGTCGTTTGTATAGATTTCCATCTCCTCTGTAAGAGCAACTGGTGGAAGTTTG

Fln Alignment:

Contig18737___LGCHSFLYASQN--KVHPTGGYPPGIGTKNALLVMGAVNALGFLFTFLVPETKGK
Q1XG57_______________VGAFGFLYAAQSTHQSEVDHGYHKGIGVKNSLILLGVTNAMGFLFTFLVPETNGK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
232		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain