SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18734

Length: 2078 nt

UniGene Fasta

>sp_v3.0_unigene18734
ATGGGTGTGGAGCTGATTGTTCGTTAGTTCGTTCCTTCTTCCTTTACTCCCCTCTGATTGCCTGCTAATGTCCAGCCTTTTATGCCCTGAAACCAAGCGACGGTCGGAGTTGGAGTGTGGAGCTGATTGTTCGTTAGTTCGTTCCTTCTTCCTTTACTCCCCTCTGATTGCCTCGCTGAAGCGAGCGATTAAAATAGAATGGAGGACAACTCTCTGCGACTTCCCATTCTGGAGAAGAAGGGAGATGGTGGAAGGGACAGTGTTATAATCTTCCAGAAATACAGTGAAGCAGAGGGGGATTTGAAGAAGAGAATTTGGGTTGAATCGAAGAAGCTATGGCGGATAGCAGGCCCTGCCATTTTTACACGTCTCACGACGTACGGGACGAACCTCGTTACACAATCCTTCGCAGGCCACCTGGGCGATCTGGAGCTTGCTGCTATTACCATCTCCACAACTGTCATTATTGGTCTCAGTTTCGGCCTGATGCTAGGAATGGGAAGCGCCCTGGAGACAATGTGTGGTCAAGCTTTTGGAGCTCGACAGTATGATATGCTTGGCGTTTACCTACAGCGCTCTTGGATTGTGCTATTCATTGTTGCATTATTGCTGCTACCCATGTATATATTTGCCACGCCCATTTTGATTCTACTGGGCCAGACCGCTGAAATATCTGAGCTCTCTGGCACACTTGCAATCTGGATGATACCTCAGCATTTTGGATTTGCATTCTCTCTTCCTCTTCAGAGATATCTACAATCGCAGTTGAAAAACTCAGTGATTGCCGGGTTATCTGGAGCGACCTTATTAATCCATATATTCTTAAGTTGGCTTTTCATTGAGAAGTTGGGAATGGGGGTTATTGGAGCTGCTATTACCTTGGATATAGCGTCATGGCTCCCATTGATTGGCCTGTTTCTCTATATGGTTTGCGGGGGCTGTCCTCTCACATGGAAAGGATTTTCAAGAGAGGCATTCTCGGGTCTCTGGCCCTTTATCAAGCTGTCTATGGCTTCTGGTGTAATGCTATGCTTGGAAATCTGGTATTACAGAGTGTTGATTCTCTTGACAGGACATCTAAATGATGCAGAAACTGCACTGGATTCCCTTTCAATCTGCATGAATATTAATGGAGTCGAGGTGATGATACCGCTCGCCTTTCTCGCTGCCACAGGGGTAAGGGTTGCGAATGAGCTTGGAAGTGGAAATGGAAAAGGAGCAAAGTTTGCAGTGATTGTTTCTGTGACCACCTCCTGTGCTATAGGTCTTGTATTTTGGGTTCTCATCCTGGTCTTCCGTGATGATTTTGCTATCATATTCACAGACAGTACAGTCATCATAGAGGCAGTATCCAAATTGGCATACTTGCTCTCATTCACCATCCTCCTTAACAGCGTGCAGCCAGTACTTTCAGGCGTGGCAATTGGATCGGGATGGCAGTCTATTGTTGCTTATGTGAACATAGGGTGTTACTACGTAATTGGGGTTCCATTTGGAGTGGTGCTTGGCATGGTGTTTAATTTTGGAGTCATGGGGATATGGGCTGGAATGATAAGCGGGACAGCGGTTCAAACACTTGTTTTAGCGATCATCACATATCGTTGTGATTGGGAGAAAGAGGCTGCTAAAGCAATCGACCGTGTCCAAATATGGGCTTCTGTGGGTACTCCAAAATCTGAGTCGACTAACGAATCGGCCAGTCTGAATTGAGATATATGTATCTCAAAATCTCATGCCCTGCATGACCGGTGATAAGAAATATACAATGCAATACTTATTGTATACCTATTTAATTGTGTTCACCTCGGGACACAATTGTCGGATTCCCTGCTGCCTTCAACAAAAGAACGCAACATTTTTCCATTCACTTCAACATTCTGCTGGAACTGGGAGACAAGCTCACAGTCAAAAGCCATTATATAGCGAGGACAGATTCAGTCCTTGCATTCTGATCGATGTTTTGTAAAATTAACATTGATAACTGAAGCAGGTTGCTCCAGTTTTATATATGGATATTTGCTTCAGTTTCATATGTGGCTGGATATCCTTTTTTGGTCCAGGAAGTTTGGATGATCCGA

Ace file of the UniGene sp_v3.0_unigene18734

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	mate efflux domain-containing protein [Arabidopsis thaliana] gb\|AAK53040.1\|AF375456_1 AT5g65380/MNA5_11 [Arabidopsis thaliana] dbj\|BAB11560.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAN28899.1\| At5g65380/MNA5_11 [Arabidopsis thaliana] gb\|AED980	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G65380.1	MATE efflux family protein chr5:26123241-26126352 REVERSE LENGTH=486	61%
RefSeq	Arabidopsis thaliana	NP_201341.1	mate efflux domain-containing protein [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002310871.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVJ0

Fln msg:

Fln protein: MEDNSLRLPILEKKGDGGRDSVIIFQKYSEAEGDLKKRIWVESKKLWRIAGPAIFTRLTTYGTNLVTQSFAGHLGDLELAAITISTTVIIGLSFGLMLGMGSALETMCGQAFGARQYDMLGVYLQRSWIVLFIVALLLLPMYIFATPILILLGQTAEISELSGTLAIWMIPQHFGFAFSLPLQRYLQSQLKNSVIAGLSGATLLIHIFLSWLFIEKLGMGVIGAAITLDIASWLPLIGLFLYMVCGGCPLTWKGFSREAFSGLWPFIKLSMASGVMLCLEIWYYRVLILLTGHLNDAETALDSLSICMNINGVEVMIPLAFLAATGVRVANELGSGNGKGAKFAVIVSVTTSCAIGLVFWVLILVFRDDFAIIFTDSTVIIEAVSKLAYLLSFTILLNSVQPVLSGVAIGSGWQSIVAYVNIGCYYVIGVPFGVVLGMVFNFGVMGIWAGMISGTAVQTLVLAIITYRCDWEKEAAKAIDRVQIWASVGTPKSESTNESASLN*

Protein Length: 505

Fln nts: ATGGGTGTGGAGCTGATTGTTCGTTAGTTCGTTCCTTCTTCCTTTACTCCCCTCTGATTGCCTGCTAATGTCCAGCCTTTTATGCCCTGAAACCAAGCGACGGTCGGAGTTGGAGTGTGGAGCTGATTGTTCGTTAGTTCGTTCCTTCTTCCTTTACTCCCCTCTGATTGCCTCGCTGAAGCGAGCGATTAAAATAGA_-_ATGGAGGACAACTCTCTGCGACTTCCCATTCTGGAGAAGAAGGGAGATGGTGGAAGGGACAGTGTTATAATCTTCCAGAAATACAGTGAAGCAGAGGGGGATTTGAAGAAGAGAATTTGGGTTGAATCGAAGAAGCTATGGCGGATAGCAGGCCCTGCCATTTTTACACGTCTCACGACGTACGGGACGAACCTCGTTACACAATCCTTCGCAGGCCACCTGGGCGATCTGGAGCTTGCTGCTATTACCATCTCCACAACTGTCATTATTGGTCTCAGTTTCGGCCTGATGCTAGGAATGGGAAGCGCCCTGGAGACAATGTGTGGTCAAGCTTTTGGAGCTCGACAGTATGATATGCTTGGCGTTTACCTACAGCGCTCTTGGATTGTGCTATTCATTGTTGCATTATTGCTGCTACCCATGTATATATTTGCCACGCCCATTTTGATTCTACTGGGCCAGACCGCTGAAATATCTGAGCTCTCTGGCACACTTGCAATCTGGATGATACCTCAGCATTTTGGATTTGCATTCTCTCTTCCTCTTCAGAGATATCTACAATCGCAGTTGAAAAACTCAGTGATTGCCGGGTTATCTGGAGCGACCTTATTAATCCATATATTCTTAAGTTGGCTTTTCATTGAGAAGTTGGGAATGGGGGTTATTGGAGCTGCTATTACCTTGGATATAGCGTCATGGCTCCCATTGATTGGCCTGTTTCTCTATATGGTTTGCGGGGGCTGTCCTCTCACATGGAAAGGATTTTCAAGAGAGGCATTCTCGGGTCTCTGGCCCTTTATCAAGCTGTCTATGGCTTCTGGTGTAATGCTATGCTTGGAAATCTGGTATTACAGAGTGTTGATTCTCTTGACAGGACATCTAAATGATGCAGAAACTGCACTGGATTCCCTTTCAATCTGCATGAATATTAATGGAGTCGAGGTGATGATACCGCTCGCCTTTCTCGCTGCCACAGGGGTAAGGGTTGCGAATGAGCTTGGAAGTGGAAATGGAAAAGGAGCAAAGTTTGCAGTGATTGTTTCTGTGACCACCTCCTGTGCTATAGGTCTTGTATTTTGGGTTCTCATCCTGGTCTTCCGTGATGATTTTGCTATCATATTCACAGACAGTACAGTCATCATAGAGGCAGTATCCAAATTGGCATACTTGCTCTCATTCACCATCCTCCTTAACAGCGTGCAGCCAGTACTTTCAGGCGTGGCAATTGGATCGGGATGGCAGTCTATTGTTGCTTATGTGAACATAGGGTGTTACTACGTAATTGGGGTTCCATTTGGAGTGGTGCTTGGCATGGTGTTTAATTTTGGAGTCATGGGGATATGGGCTGGAATGATAAGCGGGACAGCGGTTCAAACACTTGTTTTAGCGATCATCACATATCGTTGTGATTGGGAGAAAGAGGCTGCTAAAGCAATCGACCGTGTCCAAATATGGGCTTCTGTGGGTACTCCAAAATCTGAGTCGACTAACGAATCGGCCAGTCTGAATTGA___GATATATGTATCTCAAAATCTCATGCCCTGCATGACCGGTGATAAGAAATATACAATGCAATACTTATTGTATACCTATTTAATTGTGTTCACCTCGGGACACAATTGTCGGATTCCCTGCTGCCTTCAACAAAAGAACGCAACATTTTTCCATTCACTTCAACATTCTGCTGGAACTGGGAGACAAGCTCACAGTCAAAAGCCATTATATAGCGAGGACAGATTCAGTCCTTGCATTCTGATCGATGTTTTGTAAAATTAACATTGATAACTGAAGCAGGTTGCTCCAGTTTTATATATGGATATTTGCTTCAGTTTCATATGTGGCTGGATATCCTTTTTTGGTCCAGGAAGTTTGGATGATCCGA

Fln Alignment:

Contig18734___MEDNSLRLPILEKKGDGGRDSVIIFQKYSEAEGDLKKRIWVESKKLWRIAGPAIFTRLTTYGTNLVTQSFAGHLGDLELAAITISTTVIIXXXXXXXXXXXXXXETMCGQAFGARQYDMLGVYLQRSWIVLFIVALLLLPMYIFATPILILLGQTAEISELSGTLAIWMIPQHFGFAFSLPLQRYLQSQLKNSVIAGLSGATLLIHIFLSWLFIEKLGMGVIGAAITLDIASWLPLIGLFLYMVCGGCPLTWKGFSREAFSGLWPFIKLSMASGVMLCLEIWYYRVLILLTGHLNDAETALDSLSICMNINGVEVMIPLAFLAATGVRVANELGSGNGKGAKFAVIVSVTTSCAIGLVFWVLILVFRDDFAIIFTDSTVIIEAVSKLAYLLSFTILLNSVQPVLSGVAIGSGWQSIVAYVNIGCYYVIGVPFGVVLGMVFNFGVMGIWAGMISGTAVQTLVLAIITYRCDWEKEAAKAIDRVQIWASVGTPKSESTNESASLN
A9NVJ0_______________MEDDSLRVPILERNGEEGRDSVIIFQEESQAEGDLRKRIWVESKKLWRIAGPAIFTRLTTYGTNLVTQAFAGHLGDLELAAITISTTVIVGLSFGLLLGMGSALETMCGQAFGARQYDMLGVYLQRSWIVLFIVAVILLPMYIFATPILILLGQTTEISQLSGTLAIWMIPQHFGFAFSLPLQRYLQSQLKNSVIAWLSGVTLLIHIFLSWLVIDKLGMGVIGAAITLDIASWLPFIGLFLYMVCGGCPLTWKGFSVEAFSALWPFIKLSIASGVMLCLEIWYYRVLILLTGHLADAETALDSLSICMNINGLEVMIPLAFLAATGVRVANELGSGNGKGAKFAVIVSVTTSCAIGLVFWVLILILRDDFAIIFTDSAVIIKAVSKLAYLLSFTILLNSVQPVLSGVAIGSGWQSIVAYVNIGCYYVIGVPFGVLLGMVFDFGVMGIWAGMICGTAVQTVVLAIITYRCDWEKEAAKAIDRVKVWAVAGTPKSGSTKAPASLN

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
376	16		83		0.994512
387			80	20	0.995493
396		80		20	0.995493
406			20	80	0.995493
413		80		20	0.995493
421		80		20	0.995493
426		80		20	0.995493
435			80	20	0.995493
450		80		20	0.995493
456		80	20		0.995493
459	80		20		0.995493
486		45	54		1.0
490	45	54			1.0
525		44		55	1.0
539	10		90		0.90298
553		10	90		0.90298
566	12			87	0.992554
567	12			87	0.992554
570	87		12		0.992554
571		87		12	0.992554
584	14			85	0.993533
653	11	88			0.923564
655	88		11		0.923564
656		88	11		0.923564
691		85	14		0.993533
844			18	81	0.999994
919			90	10	0.90298
1018		14		85	0.999981
1192	11		88		0.923564
1225	81			18	1.0
1381		85		14	0.999981
1418			88	11	0.923564
1419			88	11	0.923564
1558	87		12		0.992554
1559	90		10		0.90298
1964	31			68	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain