SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18701

Length: 668 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18701

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thioredoxin reductase n=2 Tax=Picea sitchensis RepID=A9NXV4_PICSI	-	-	84%
FL-Next	sp=Thioredoxin reductase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	Thioredoxin reductase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Thioredoxin-disulfide reductase.	EC:1.8.1.9	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pyrimidine metabolism	00240		0.0	%
Sma3	Selenocompound metabolism	00450		0.0	%

Source	Gene names
Sma3	At2g17420; At2g41680; At2g41680/T32G6.20; At4g35460; CHLREDRAFT_132865; CHLREDRAFT_196120; CHLREDRAFT_78928; CvNTR-C; F5J6.18; GSVIVT00006001001; GSVIVT00025615001; MICPUCDRAFT_23559; NTR1; NTR2; NTR3; NTRC; NTRC1; OJ1479_B12.9; OSJNBb0039F24.13; OSTLU_28

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	thioredoxin-disulfide reductase activity	GO:0004791	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	pollen germination	GO:0009846	Biological Process	-
Sma3	cell growth	GO:0016049	Biological Process	-
Sma3	removal of superoxide radicals	GO:0019430	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	thioredoxin biosynthetic process	GO:0042964	Biological Process	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	seed development	GO:0048316	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	Thioredoxin reductase	IPR005982	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II, active site	IPR008255	-	-
Sma3		IPR012335	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR015467	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3		IPR017909	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G17420.1	NTRA, ATNTRA, NTR2 NADPH-dependent thioredoxin reductase A chr2:7564357-7566219 FORWARD LENGTH=378	76%
RefSeq	Arabidopsis thaliana	NP_179334.4	NADPH-dependent thioredoxin reductase A [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002317631.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
291			66	33	0.997452
323	33	66			1.0
332	77	22			0.999999
338		22		77	0.999999
339		22	77		0.999999
344	77	22			0.999999
345	77			22	0.999999
348		25	75		1.0
349	22			77	0.999999
351			77	22	0.999999
352		22	77		0.999999
353	22		77		0.999999
410	37	62			1.0
431		12		87	0.992554
441	71		28		1.0
463	71	28			1.0
466		28	71		1.0
472	42		57		1.0
480	8	41		50	1.0
492		83		16	0.999991
564		50		50	1.0
567		36		63	1.0
586		71	28		1.0
593	14		42		1.0
626		83		16	0.994512
640		75	25		0.996473
645	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain