SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18662

Length: 531 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene18662
ATGGGGAAACCAGAACTAGGGTTTTATCGGGGAGAGCGTCTGTCACAGAGGTTTTATTATCGCAGAGGTTTTGTTGTCGTGGTGAGGCTGTGTTGCACGGTTTTTACTGTCGCAGAAGCTAAGGTGTGCAGACGCTGTGTTGCACGGTTTTTACTGTCGCAGAAGCTAAGGTGTGCAGACTAGAAGGAGAAACCATGGCGGTCGTTTTACCACAGCCCGAAGTGAAGCTTTTCAATCGCTGGACGTTTGAGGACGTAGAGGTTAATGATCTATCACTAGCAGATTACATAGCCGTCTCATCACAAAAACATGCTACATTTGTCCCACACACAGCTGGCCGTTACTCAGTCAAACGGTTTCGAAAGGCTCAGTGCCCTATTGTTGAACGGTTGACCAACTCTTTGATGATGCATGGGCGTAACAATGGAAAGAAGTTGATGGCTGTACGAATAGTCAAACATGCTATGGAAATAATTCATCTCCTTACTGATCAGAACCCAATACAGGTCATAGTGGATGCTATCATTAACA

Ace file of the UniGene sp_v3.0_unigene18662 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=40S ribosomal protein S5 emb\|CAA06491.1\| 40S ribosomal protein S5 [Cicer arietinum]	-	-	0.0	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	40S ribosomal protein S5	-	-	1.027e-24	-

Source	Gene names
Sma3	At2g37270; At3g11940; CHLREDRAFT_191776; F26K24.23; F3G5.6; GSVIVT00025458001; GSVIVT00026702001; LOC_Os11g29190; MEC18.4; MICPUCDRAFT_48485; MICPUN_90425; OSJNOa264G09.6; OSTLU_12674; Os01g0100700; Os11g0482000; OsI_00008; OsI_36106; OsJ_00007; OsJ_33893

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	Metallothionein, family 15, plant	IPR000347	-	-
Sma3	Ribosomal protein S7, eukaryotic/archaeal	IPR005716	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G11940.1	ATRPS5A, AML1, RPS5A ribosomal protein 5A chr3:3778175-3779354 REVERSE LENGTH=207	86%
RefSeq	Arabidopsis thaliana	NP_187800.1	40S ribosomal protein S5-2 [Arabidopsis thaliana]	86%
RefSeq	Populus trichocarpa	XP_002309278.1	predicted protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRE6

Fln msg: Distance to subject end: 86 aas, your sequence is shorter than subject: 112 - 198

Fln protein: MAVVLPQPEVKLFNRWTFEDVEVNDLSLADYIAVSSQKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAIIN

Protein Length: 113

Fln nts: ATGGGGAAACCAGAACTAGGGTTTTATCGGGGAGAGCGTCTGTCACAGAGGTTTTATTATCGCAGAGGTTTTGTTGTCGTGGTGAGGCTGTGTTGCACGGTTTTTACTGTCGCAGAAGCTAAGGTGTGCAGACGCTGTGTTGCACGGTTTTTACTGTCGCAGAAGCTAAGGTGTGCAGACTAGAAGGAGAAACC_-_ATGGCGGTCGTTTTACCACAGCCCGAAGTGAAGCTTTTCAATCGCTGGACGTTTGAGGACGTAGAGGTTAATGATCTATCACTAGCAGATTACATAGCCGTCTCATCACAAAAACATGCTACATTTGTCCCACACACAGCTGGCCGTTACTCAGTCAAACGGTTTCGAAAGGCTCAGTGCCCTATTGTTGAACGGTTGACCAACTCTTTGATGATGCATGGGCGTAACAATGGAAAGAAGTTGATGGCTGTACGAATAGTCAAACATGCTATGGAAATAATTCATCTCCTTACTGATCAGAACCCAATACAGGTCATAGTGGATGCTATCATTAACA

Fln Alignment:

Contig18662___MAVVLPQPEVKLFNRWTFEDVEVNDLSLADYIAVSSQKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAIIN
A9NRE6_______________MAATLPQPEVKLFNRWTFEDVEVNDLSLADYIAVQSQKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAIIN

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
397	14		85		0.999981
399		14	85		0.999981
431	72	9			0.999994
499		11		88	0.991528
501	42	57			1.0
502	14	42	42		1.0
503		85		14	0.993533
504		33	50		1.0
506			40	60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain