SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18660

Length: 961 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene18660 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calmodulin-binding heat-shock protein, putative n=1 Tax=Ricinus communis RepID=B9RIW9_RICCO	-	-	0.0	77%
FL-Next	tr=Calmodulin-binding heat shock protein; Gossypium hirsutum (Upland cotton) (Gossypium mexicanum).	-	-	0.0	76%
Sma3	Calmodulin-binding heat-shock protein	-	-	4.879e-17	-

Source	Gene names
Sma3	AT4g00500; At3g49050; At4g00500; At4g00500/F6N23.21; F6N23.21; GSVIVT00022453001; GSVIVT00026860001; GSVIVT00031270001; GSVIVT00037669001; OSJNBb0033N16.13; Os06g0256300; Os07g0481200; Os09g0569300; OsI_22415; OsI_25998; OsI_32459; OsJ_12322; OsJ_20861; O

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	triglyceride lipase activity	GO:0004806	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	lipid catabolic process	GO:0016042	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase-like	IPR001279	-	-
Sma3	Transaldolase	IPR001585	-	-
Sma3	Lipase, class 3	IPR002921	-	-
Sma3	Mono-/di-acylglycerol lipase, N-terminal	IPR005592	-	-
Sma3	RNA-metabolising metallo-beta-lactamase	IPR011108	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G49050.1	alpha/beta-Hydrolases superfamily protein chr3:18181498-18183613 FORWARD LENGTH=477	78%
RefSeq	Arabidopsis thaliana	NP_190474.1	alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002318811.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: Q1RN86

Fln msg: Separated hits, possible frame ERROR between 428 and 439, your sequence is shorter than subject: 303 - 457

Fln protein: DLIKKNPSYTLTFAGHSLGSGVAAMLTLVVANNREEIGNIPRSKIRCYAIAPARCMSLNLAVRYADIINSVILQDDFLARTATPLEDIFESIFCLPCLLCVRCMKDTFMSEEKKLKDPRRLYAPGRLYHIVDRKPCGCGRYxxxxxRRALGFDWRFEHIILSLNTTSDHAIIWIERETQKALQLMMERDHPMEIPSKQIMERQETIAKEHNREHKDALEKALSLNIPHAFSPSYDTFDKDENTEQEVLLNEPENSLLDTDVVESSANKQTVEKKTDWEELINKLFEKDASGSIVLKKGVDSV*

Protein Length: 304

Fln nts: AGGATTTGATTAAGAAAAACCCCTCATATACGCTGACTTTTGCAGGGCACTCACTTGGATCAGGAGTTGCTGCCATGCTAACTTTGGTGGTGGCAAACAACAGGGAGGAAATAGGTAATATACCCAGAAGCAAGATTCGGTGTTATGCAATCGCCCCTGCGCGGTGTATGTCGCTTAACTTGGCAGTAAGATATGCAGATATCATCAATTCTGTTATCTTGCAGGATGATTTCTTGGCAAGGACTGCTACTCCTCTCGAAGATATTTTTGAGTCTATTTTCTGCTTGCCTTGTTTATTGTGCGTCAGATGCATGAAAGATACATTTATGTCGGAAGAAAAGAAGCTTAAAGATCCAAGGAGACTATATGCACCAGGGCGGTTGTATCACATTGTGGATAGAAAGCCTTGTGGTTGTGGAAGGTATCCxxxxxxxxxxxxACGTCGTGCCCTTGGCTTTGACTGGAGGTTTGAACATATTATCCTTTCACTAAATACTACATCAGACCATGCAATCATTTGGATTGAAAGGGAGACACAGAAAGCTTTGCAGCTCATGATGGAGAGGGATCACCCCATGGAAATTCCTTCTAAGCAGATAATGGAAAGACAAGAAACAATCGCAAAAGAACACAATAGAGAGCACAAGGATGCTCTTGAAAAGGCTCTCTCCCTCAATATACCCCATGCATTCTCACCATCTTATGACACCTTTGATAAGGATGAAAATACTGAACAGGAAGTCCTTTTGAATGAACCTGAGAATTCATTATTGGATACCGACGTTGTGGAATCTTCGGCAAATAAACAAACAGTTGAGAAAAAGACTGATTGGGAGGAACTCATTAATAAGCTTTTTGAGAAAGATGCATCTGGTAGTATTGTATTGAAGAAAGGGGTGGATAGTGTTTGATTAATCTACCTCTCCGATTAATTAACTATTTTGTTTACTGGATGGTTGGTGT

Fln Alignment:

Contig18660___DLIKKNPSYTLTFAGHSLGSGVAAMLTLVVANNREEIGNIPRSKIRCYAIAPARCMSLNLAVRYADIINSVILQDDFLARTATPLEDIFESIFCLPCLLCVRCMKDTFMSEEKKLKDPRRLYAPGRLYHIVDRKPCGCGRYPxxxxRRALGFDWRFEHIILSLNTTSDHAIIWIERETQKALQLMMERDHPMEIPSKQIMERQETIAKEHNREHKDALEKALSLNIPHAFSP--SYDTFDKDENTEQEVLLNEPENSLLDTDVVESSANKQTVEKKTDWEELINKLFEKDASGSIVLKK
Q1RN86_______________ELVEEHPNYTLTFAGHSLGSGVAAMLALVVVQHQDKLGNIDRSRIRCYAIAPARCMSLNLAVRYADVINSVVLQDDFLPRTATPLVDIFKSLFCLPCLLCLRCMKDTCIPEEKMFKDPRRLYAPGRLYHIVERRPFRCGRFPxxxxKTAVPVDGRFEHIVLSCNATSDHAIIWIERESQKAMDLMLEKDRLMEIPAKQRMERQETLTKEHKQEYKAALQRAVSLSVPHAYSPPSGYGTFDESEDVEKY------NSCKLSSESSVGSSGKS--KSKVSWNELIERLFDRDESGHMVLKK

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
270			75	25	1.0
281			33	66	1.0
329		77		22	0.999999
368	69		30		1.0
398		18		81	0.999994
399	18	81			0.999994
400		81	18		0.999994
404	18			81	0.999994
405	18	81			0.999994
406		81	18		0.999994
407	81		18		0.999994
411		18		81	0.999994
428		30		70	1.0
432		30		70	1.0
433		90		10	0.90298
445		90		10	0.90298
446		90	10		0.90298
448	90		10		0.90298
453		10		90	0.90298
454	10			90	0.90298
458	10			90	0.90298
463	10			90	0.90298
466		10		90	0.90298
486		12		87	0.992554
488	87		12		0.992554
489		12		87	0.992554
491	12			87	0.992554
493			12	87	0.992554
497	87	12			0.992554
500		87	12		0.992554
502		28	28	42	1.0
503		28	42		1.0
504	71	28			1.0
505			71	28	1.0
507		28	71		1.0
509	28	71			1.0
510	71	28			1.0
512		71	28		1.0
513		71	28		1.0
516			71	28	1.0
517			71	28	1.0
518			28	71	1.0
523	71			28	1.0
525			71	28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain