SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18635

Length: 1096 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene18635 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Caffeate O-methyltransferase n=4 Tax=Picea RepID=Q5NDD5_PICAB	-	-	92%
FL-Next	tr=Caffeate O-methyltransferase; Picea abies (Norway spruce) (Picea excelsa).	-	-	92%
Sma3	Caffeic acid 3-O-methyltransferase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	(S)-scoulerine 9-O-methyltransferase.	EC:2.1.1.117	-	6.549e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Isoquinoline alkaloid biosynthesis	00950		6.549e-07	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063		6.549e-07	%
Sma3	Biosynthesis of secondary metabolites	01110		6.549e-07	%
Sma3	(Iso)eugenol O-methyltransferase.	EC:2.1.1.146	-	3.742e-09	-
Sma3	Catechol O-methyltransferase.	EC:2.1.1.6	-	1.079e-26	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Steroid hormone biosynthesis	00140		1.079e-26	%
Sma3	Tyrosine metabolism	00350		1.079e-26	%
Sma3	Betalain biosynthesis	00965		1.079e-26	%
Sma3	Metabolic pathways	01100		1.079e-26	%
Sma3	Caffeate O-methyltransferase.	EC:2.1.1.68	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Phenylpropanoid biosynthesis	00940		0.0	%
Sma3	Biosynthesis of phenylpropanoids	01061		0.0	%
Sma3	Metabolic pathways	01100		0.0	%
Sma3	Biosynthesis of secondary metabolites	01110		0.0	%
Sma3	Quercetin 3-O-methyltransferase.	EC:2.1.1.76	-	2.117e-09	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Flavone and flavonol biosynthesis	00944		2.117e-09	%

Source	Gene names
Sma3	AOMT1; AOMT3; At1g21100; At1g21110; At1g21110/T22I11_6; At1g21120; At1g21130; At1g33030; At1g51990; At1g62900; At1g63140; At1g76790; At1g77520; At1g77530; At3g53140; At5g53810; At5g54160; BMT; COMT; COMT-1; COMT1; COMT2; COMT3; COMT4; COMT5; COMT6; COMTL1

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	O-methyltransferase activity	GO:0008171	Molecular Function	-
Sma3	catechol O-methyltransferase activity	GO:0016206	Molecular Function	-
Sma3	5-hydroxyfuranocoumarin 5-O-methyltransferase activity	GO:0030752	Molecular Function	-
Sma3	quercetin 3-O-methyltransferase activity	GO:0030755	Molecular Function	-
Sma3	(S)-scoulerine 9-O-methyltransferase activity	GO:0030777	Molecular Function	-
Sma3	inositol 4-methyltransferase activity	GO:0030787	Molecular Function	-
Sma3	myricetin 3'-O-methyltransferase activity	GO:0033799	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	caffeate O-methyltransferase activity	GO:0047763	Molecular Function	-
Sma3	(iso)eugenol O-methyltransferase activity	GO:0050630	Molecular Function	-
Sma3	lignin biosynthetic process	GO:0009809	Biological Process	-
Sma3	flavonol biosynthetic process	GO:0051555	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	O-methyltransferase, family 2	IPR001077	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Plant methyltransferase dimerisation	IPR012967	-	-
Sma3	O-methyltransferase, COMT, eukaryota	IPR016461	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G54160.1	ATOMT1, OMT1 O-methyltransferase 1 chr5:21982075-21984167 FORWARD LENGTH=363	60%
RefSeq	Arabidopsis thaliana	NP_200227.1	Quercetin 3-O-methyltransferase 1 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002317838.1	caffeic acid 3-O-methyltransferase [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q5NDD5

Fln msg: your sequence is shorter than subject: 213 - 364

Fln protein: PFTKAHGMSAFEYPAIDQRFNRVFNRAMSENSTMLMNKILDTYEGFKEVQELVDVGGGIGSTLNLIVSRYPHISGINFDMPHVLADAPHYPAVKHVGGDMFDSVPSGQAIFMKWILHDWSDDHCRKLLKNCHKSLPEKGKVIAVDTILPVAAETSPYARQGFHTDLMMLAYNPGGKERTEQEFQDLAKETGFAGGVEPVCCVNGMWVMEFHK*

Protein Length: 214

Fln nts: AGCCATTCACCAAAGCCCATGGAATGAGTGCGTTCGAGTACCCGGCCATCGATCAGAGATTCAACAGGGTTTTCAACAGGGCTATGTCTGAGAATTCTACCATGTTGATGAACAAGATTCTGGATACTTACGAGGGTTTTAAGGAGGTTCAGGAGTTGGTGGATGTGGGAGGAGGAATTGGGTCGACTCTCAATCTCATAGTGTCTAGGTATCCCCACATTTCAGGAATCAACTTCGACATGCCCCATGTGCTGGCCGATGCTCCTCACTACCCAGCTGTGAAACATGTGGGTGGAGACATGTTTGATAGTGTACCAAGTGGCCAAGCAATTTTTATGAAGTGGATTCTGCATGATTGGAGCGACGATCATTGCAGGAAGCTTTTGAAGAATTGTCACAAGTCGTTGCCAGAGAAGGGGAAGGTAATTGCGGTGGACACCATTCTCCCAGTGGCTGCAGAGACATCTCCTTATGCTCGTCAGGGATTTCATACAGATTTAATGATGTTGGCATACAACCCAGGGGGCAAGGAACGCACAGAGCAAGAATTTCAAGATTTAGCTAAGGAGACGGGATTTGCAGGTGGTGTTGAACCTGTATGTTGTGTAAATGGAATGTGGGTAATGGAATTCCACAAGTAG___CTCTGAGTGGATGTCAGCTGGATTATCTTCAGTGTCTGGTAAAGCGATGATTTCGATAAGATGCCATATCAACCATCGATTATGGTTTACCAGGTTGAGTAAAGTGGGGCCGGCTGATCGGGATTGTTGTTTGGTTTTCTAAATGCAGAATAATTTAAAGCATGTACATATAATTGGTGGGGACATGGGCACATGTGAATTATTAGTATAGGTATCAAAATTTGAACAACTTCATATATGGTTGGTTATCCTTTGAATTATTGATATTAATATCAAAGGTGGAATAAGTCCATGTTAGTTTGGCTATTGTGGAGGCCTTGCTAGTACGCGCTTTTTGGAAAATTATTATACACTTCCAAATATCACTCGCAAAAAGTATGGTTATGTTTAGTCAAAGTTTTAGGTAAAAGAATTATGACATAATTTAATATATATATTTCATAAAGTTATATGGT

Fln Alignment:

Contig18635___PFTKAHGMSAFEYPAIDQRFNRVFNRAMSENSTMLMNKILDTYEGFKEVQELVDVGGGIGSTLNLIVSRYPHISGINFDMPHVLADAPHYPAVKHVGGDMFDSVPSGQAIFMKWILHDWSDDHCRKLLKNCHKSLPEKGKVIAVDTILPVAAETSPYARQGFHTDLMMLAYNPGGKERTEQEFQDLAKETGFAGGVEPVCCVNGMWVMEFHK
Q5NDD5_______________PFTKAHGMNAFEYPAKDQRFNRVFNRGMSEHSTMLMNKILDTYQGFKEVQELVDVGGGVGSTLNLIVSRYPHISGINFDMPHVVTDAPHYPAVKHVGGDMFDSVPTGQAIFMKWILHDWSDDHCRKLLKNCHKALPEKGKVIVVDTILPVAAETSPYARQGFHIDLLMLAYNPGGKERTEQEFQDLAKEAGFAGGVKPVCCANGMWVMEFHK

SNPs (tot: 6)

Position	A %	C %	T %	Probability
672		20	80	0.995493
676		20	80	0.995493
677		20	80	0.995493
678	20	80		0.995493
679		80	20	0.995493
695	50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain