SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18621

Length: 1724 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18621

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pollen tube RhoGDI2 n=1 Tax=Nicotiana tabacum RepID=Q1ZZN8_TOBAC	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	Rho GDP-dissociation inhibitor, putative	-	-	7.428e-17	-

Source	Gene names
Sma3	At1g12070; At3g07880; At3g07880/F17A17_22; F12F1.5; F17A17.22; GDI1; GSVIVT00010885001; GSVIVT00025870001; GSVIVT00028543001; GSVIVT00033507001; MtrDRAFT_AC150798g7v2; OJ1008_D06.2; OJ2056_H01.35; Os01g0913600; Os02g0719000; Os06g0318300; OsI_04893; OsI_0

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	Rho GDP-dissociation inhibitor activity	GO:0005094	Molecular Function	-
Sma3	GTPase activator activity	GO:0005096	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	RHO protein GDP dissociation inhibitor	IPR000406	-	0.0	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G07880.1	SCN1 Immunoglobulin E-set superfamily protein chr3:2514175-2515544 FORWARD LENGTH=240	62%
RefSeq	Arabidopsis thaliana	NP_187445.1	Rho GDP-dissociation inhibitor 1 [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002308781.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LME6

Fln msg:

Fln protein: MSVLTGSMRREKSEVYSGFKSEMGEVKEIVEELGDADLSGNDYSDEKLLRQFSKSSYYETDEEEQDGAKVGEDYVLGPLLPLKEQLEKDKEDESLRRWKEQLLGSLDIESIGERLEPDVKILSLSILSPERPDLILPIPFASKSRVSSFTLKEGSRYGLKFCFSVLDNIVSGLTYINTVWKSGVRVDNTRVMLGTFSPQQEPYTYVMDEETTPSGILARGSYAARTKFVDDDDKCYLEMNYTFEIRKNW*

Protein Length: 251

Fln nts: ATAAGAGGAGATATTAAAGGGAGCGTAGGACTTGGGAAATGCTGCATGTGTGGGAGAGGTTTAATTGTGAGTTCCAGGCATCTTCGTTTTGTTTTTAGGTTTTGTTTTTAAGCGAGGCTGACCCACTGTAGCACTGGCACTAGTTTGAGAGGCACCCACGTCTATGCATTTTGGTATATATTTGTATAGTAGCGATACAGACCCCATTGCTGCTGCGATTTGATTCCTTCTTGGTTAAGAGCTCGATTCTCTGAGGAGATTCGAGTATAATATATAGTTATAGCTATAGTTCCTATTCCCAAAGGGCTGACTGTGAAGGAAACTGAATTAAAGTCAGGATTCAGGGTTGTATAGGGTCCGGGTTTAGTGAAGAAATTTAAGTCAAAAGATTATGAAGGTTAATGTCTGTTCAGTTTTGGTTCCAGGTAATGGCCTTGTGTTTTGTCAGTGAAGATTTGTAACTTGTTGTCCTATTCATAGCAGTCAGTAGTTGTTCTTTACCTCAAATTTTGTAAAAGAAGCAGAGATTTAGTGAGTGCCGACA_-_ATGTCTGTTTTGACGGGCTCCATGAGACGAGAGAAGTCGGAGGTATACAGTGGTTTTAAGTCGGAAATGGGCGAAGTTAAGGAAATTGTGGAGGAACTGGGCGATGCCGATCTTTCCGGAAATGATTACAGCGATGAAAAACTGTTGAGGCAGTTCAGCAAGTCTTCGTATTATGAGACAGATGAGGAGGAGCAGGACGGTGCTAAAGTTGGAGAGGATTATGTCCTCGGACCACTTCTTCCTCTCAAGGAGCAGCTCGAGAAAGATAAGGAGGACGAGAGCTTGCGCAGATGGAAAGAGCAACTGCTTGGCAGTCTGGACATTGAGTCCATAGGAGAACGCCTGGAGCCGGATGTGAAGATCCTGAGCCTTTCAATATTATCCCCAGAACGGCCCGACTTAATTCTCCCTATTCCATTTGCTTCTAAATCCAGGGTTTCCTCGTTTACTCTCAAGGAAGGCAGCCGTTACGGTCTGAAATTCTGTTTCTCAGTTCTCGATAACATTGTGTCCGGCCTCACTTACATCAATACCGTGTGGAAAAGCGGAGTTAGAGTGGACAACACTCGTGTTATGCTGGGAACATTCAGTCCTCAACAAGAACCGTATACGTACGTTATGGACGAAGAGACAACACCGTCTGGAATTCTGGCAAGAGGTTCTTACGCGGCAAGAACCAAGTTTGTTGACGACGACGATAAATGCTACCTGGAAATGAATTACACCTTCGAAATCCGGAAGAACTGGTAG___ATTCTATTCGGATTCTAGTCCGAGTAGTTTGCACTGCAATGTTGCATAGTTGTAGGTAGAAGATTTCAGGAATGTTGCATGTAAACACGACAGGCAGCATGAAGCCACGCATGGATTTGCTTTAAACGAGTGACTTCTGCCCAGGAGACACAGCGTCTGGTATTCTGGTTTGGGCTATGGTTGGGGTTTGTACAGAGAGCGTCTGGTATTATGATTTGGGCTTTATGGTTGCGATTTGTACAGAGGACATATTCCTTGTATGTTCAATGAAGTAATGGGATGAGGAAATTGCAAAATCCGTAAATAAATCCTGCATCTTTGCAGGATTTATTCCATGGTTATGCATACATTTATAATCTGTACAGAGCTTGTCTTCGATTTTTCTTGCTAAAATCTACAGCCAATGTTTCAAAGTTTTTGGAAAAACATT

Fln Alignment:

Contig18621___MSVLTGSMRREKSEVYSGFKSEMGEVKEIVEELGDADLSGNDYSDEKLLRQFSKSSYYETDEEEQDGAKVGEDYVLGXXXXXXXXXXXXXXXX----------SLRRWKEQLLGSLDIESIGERLEPDVKILSLSILSPERPDLILPIPFASKSRVSSFTLKEGSRYGLKFCFSVLDNIVSGLTYINTVWKSGVRVDNTRVMLGTFSPQQEPYTYVMDEETTPSGILARGSYAARTKFVDDDDKCYLEMNYTFEIRKNW
B8LME6_______________MSMFTSS--RNKSEVYSGFKSELGEVKEIVEEVGEAGLSGDDYSDEKLLSQFSKSLYYETDEEEQYGAKVGEEFFLGPHLPLKEQLGPLLPLKEQLEKDKEDESLRRWKEQLLGSLDMDSIGERLEPDVKILSLSMLCQDRADLILPIPFASKSKVSSFTVKEGSRYSLKFCFSVLDNIVSGLTYINTVWKSGVRVYNTRVMLGTFSPQQEPCTYVTKEETTPSGILARGYYTARTKFVDDDDRCYLEMNYSFEIRKNW

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
134		66	33		0.997452
135			33	66	0.997452
395	20		80		0.995493
477	11			88	0.923564
1638		72	27		1.0
1703		22		77	0.999999
1706	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain