SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18564

Length: 3216 nt

UniGene Fasta

>sp_v3.0_unigene18564
ACATGGGGGAGGCTTCTAGAATAGACACCCCCCCAACCCCCCGCCCTTCGCGAAAGAGAAAGTTTTCCCGACTCGTGCCCTCGAAACATTCATTTCTTATATAGCGCGGACAGGGAGCCGAACAGGTCCAGGAATCGATTTCTCTGGTTGGGTAGAGTTTCACAGGCAGAAGATTTTGGTGGTAAGGCGAAAATGAGCGTTGTAGGGTTTGATGTCGGAAACGAAAGCTGCATTGTTGCCGTTGCACGGCAGCGCGGCATTGATGTCGTGCTTAATGATGAATCGAAGAGGGAAACCCCGGCCATTGTCTGTTTCGGGGAGAAGCAGCGGTTTATTGGCACGGCCGGTGCCTCTTCGTCCCTGATGAATCCGAAGAACGCCGTCTCTCAGATCAAACGGTTGATCGGGAAGCAATTCCGTGATCCCGAAGTGCAGAGGGATTTGCAGAGCTTGCCGTTCACCGTCGATGAAGGGCCCGACGGGGGTGTGCGGATTCACGCGCGGTACCTTGGAGAGAATCGCGTCTTCAGCGCGACTCAGATTCTAGCCATGCTTTTGTCGAACCTTAAGCAAATTGCAAAGACAAATTTGAAAACAGAGGTTGTTGATTGTTGTATTGGGATACCAATTTATTTCACAGATCTCCAAAGAAGAGCGTTTTTGGATGCCGCTTCCATTGCGGGCCTAAATCCTCTCCGCTTGATGCACGAGACCACAGCCACTGCCTTGGCTTACGGCATTTACAAGACTGATCTGCCTGAAAATGATCCGTTGAACGTCGTGTTTGTTGATATCGGCCATGCTAGTATGCAGGTGTGTGTTGCTGCATTTAAAAAGGGCCAGTTGAAGATTCTGGCTCATACCTATGATAGATCTCTGGGTGGGAGGGATTTCGATGAGGTTCTTTTCAAGCATTTTGCTGATAAATTCAAGGAGCAATATCAGATAGACGTGCCAACTAATGTTCGAGCCAGTCAGAGATTGCGGGCTGCTTGCGAGAAGTTGAAGAAAGTCTTGAGTGCTAACCCTGAGGCACCTCTCAATATCGAGTGTTTAATGGATGAAAAAGACGTTAGGGGATTTATCAAACGGGACGAGTTTGAACAACTTGCACAACCGATGCTCGAGCGTGTGAAAGGGCCCTGCGTGCAGGCTTTGATTGAAGCAGGAATTACTGTAGATAAGATTCATGCGGTTGAAGTTGTTGGCTCGGGTTCTCGTGTTCCTGCAATATTAAAAATATTGACTGAGACTTTTGGAAAAGAACCGAGGCGGACTATGAATGCGAGCGAGTGTGTGGCTCGAGGATGTGCTCTCCAGTGTGCTATTCTTAGTCCGACATTCAAAGTGCGCGAATTCAAGGTTCAAGAAAGTTTTCCGTTCTCTATTGCTTTGGCGTGGAAGGATTCTGCTCCCGAGGCTGAAGATGGAACTTTAGAGCAACGGCAAACCAAAGTTGTGTTCCCTAGAGGCAACACATTGCCAAGTACAAAGGTTTTTACATTCTTAAGGTCTGGGACCTTCACAGTAGACATTTTATATGAAGATGTGAACCAAGTTCGGGCGCCTGCACTGATAAGTTCATACATGATTGGTCCTTTTCAGACTTCAAAAGGTGAAAAGGCTAAGCTGAAAGTAAGAGTCCAGTTGGATAAGCATGGAATAGTTTCGATTGATTCAGCAACTATGATTGAGGAAGAAGAAATAGAAGTCCCTGTTTCTAGTGTGAAAGAAGGATCAAATGACGAGAAAGAGACTGCTGCAATGGATACAGATGATGCACAAAACAATGGTGCATCTGCAGCTGGTGACAATGCTGATGTTAATATGCAGGATGCCAAAAATGCTGCTGGACCTGCAACAGCGGGAACTGCCACTGGTGCTGAAAATGGGATTCCTGAGGCAGAGGATAAAGCTGCCCAGATGGAGACTGATGCCAAGGCAAAAACTGTGAAAAAGAAGGTAAAGAAAACAGAGGTACCATTTAGTGAAAGAGTATTTGGGGCCATGCCACGGACAGATTTGCAGAAGGCTACTGATGAAGAATTTGAAATGGCTTTACAAGACCGAGTGATGGAAGAAACAAAGGAGAAAAAAAATGCAGTGGAAGCTTACGTTTATGACATGCGCAACAAGCTATATGAAAAATATCAGGCATATGTCACAGAGCCCCAGAGGGAGGAATTGACATCAAAGTTGCAGACAGTAGAAGATTGGTTGTATGATGAAGGAGAGGATGAAACAAAAGGTGTTTATGTTGCAAAGCTAGAAGAGCTCAAGAAGTTTGGTGATCCAATTGAGGAGAGGTACAAGGAGGATATGGAAAGAGGACGGGCAATCGATGAGCTTATATATTGTATTAATAGTTATAGAGAGGCAGCCCTTTCCAAAGACAAATTTGACCACATAGATATTGCTGATAAGCAGAAGGTTGTGAGCGAGTGTAGTGAAGCTGAATCCTGGCTATATGACAAAAGGCAACAGCAAGATTCCCTGCCAAAGCATGCCAATCCTATTGTTTTTGTAGCTGATATAAGAAGGAAAACGGAGACCTTGAACCGCTTTTGTAGGCCTATAATGACAAAGCCAAAACCGGCTCCTGCCAAGCCACCAACACAGTCATCACCACAACCTCAACCCTCTGCTGAAGCTCAGGCAAATGAGAATGCTAATAATGGTGCCACTCCAGAGGATCAAGCACCTCCGTCTGAGCCCATGGAGACGGACAATATTCAAACACCTGAATCCGAGTGACATGTCTGATTGTATTGTGTATGCTCTAGGAGTCTCCTGTTCACATTAATTATATCAGATACATTCATTTCTGATTGTCATTTTGTCTGGTTTCCAGCGTAGTTTTGTATTTCCTTCCCAAGGGAAGGATGAATAGATATGTTGCAAAATGTGAAGACGACAATGCATTTAACTCCATTTTATATTTTGGGATCTAGAAGTCTTGTTTTTAGAAGCGTTGACATTTAGTCGATAAATAGGTTGCTTCAGAGTCCCTGTCAACTCCTCTGTAAAACTTGGACACAAGAACATAATATGTTCTTAATCCATCCAGAATTTTCTCTTAGGCAACGCATGTAGTAAGTTTTTTGTATTTGGTTAGTAAAATTTTGGACAAAGGCAATCCTTGTGAAATCTTAATCTATATTGAGTATACTTATTTTTTAGTTCAACCGACGAGCAATGTTTTTCTATTTATTTTTG

Ace file of the UniGene sp_v3.0_unigene18564

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heat shock 70 kDa protein, putative n=1 Tax=Ricinus communis RepID=B9SQC9_RICCO	-	-	0.0	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Putative heat-shock protein	-	-	1.498e-10	-

Source	Gene names
Sma3	At1g11660; At1g79920; At1g79920/F19K16.12; At1g79930; CHLREDRAFT_15589; F18B13.1; F19K16.11; F25C20.19; GSVIVT00027331001; GSVIVT00034420001; GSVIVT00034421001; HSP70E; MICPUCDRAFT_45719; MICPUN_62483; OJ1174_D05.17; Os01g0180800; Os05g0181000; Os06g06798

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	response to stress	GO:0006950	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Heat shock protein 70	IPR013126	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G79930.1	HSP91 heat shock protein 91 chr1:30063781-30067067 REVERSE LENGTH=831	67%
RefSeq	Arabidopsis thaliana	NP_178111.1	heat shock protein 91 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002304187.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQU3

Fln msg: your sequence is longer than subject: 854 - 388

Fln protein: MSVVGFDVGNESCIVAVARQRGIDVVLNDESKRETPAIVCFGEKQRFIGTAGASSSLMNPKNAVSQIKRLIGKQFRDPEVQRDLQSLPFTVDEGPDGGVRIHARYLGENRVFSATQILAMLLSNLKQIAKTNLKTEVVDCCIGIPIYFTDLQRRAFLDAASIAGLNPLRLMHETTATALAYGIYKTDLPENDPLNVVFVDIGHASMQVCVAAFKKGQLKILAHTYDRSLGGRDFDEVLFKHFADKFKEQYQIDVPTNVRASQRLRAACEKLKKVLSANPEAPLNIECLMDEKDVRGFIKRDEFEQLAQPMLERVKGPCVQALIEAGITVDKIHAVEVVGSGSRVPAILKILTETFGKEPRRTMNASECVARGCALQCAILSPTFKVREFKVQESFPFSIALAWKDSAPEAEDGTLEQRQTKVVFPRGNTLPSTKVFTFLRSGTFTVDILYEDVNQVRAPALISSYMIGPFQTSKGEKAKLKVRVQLDKHGIVSIDSATMIEEEEIEVPVSSVKEGSNDEKETAAMDTDDAQNNGASAAGDNADVNMQDAKNAAGPATAGTATGAENGIPEAEDKAAQMETDAKAKTVKKKVKKTEVPFSERVFGAMPRTDLQKATDEEFEMALQDRVMEETKEKKNAVEAYVYDMRNKLYEKYQAYVTEPQREELTSKLQTVEDWLYDEGEDETKGVYVAKLEELKKFGDPIEERYKEDMERGRAIDELIYCINSYREAALSKDKFDHIDIADKQKVVSECSEAESWLYDKRQQQDSLPKHANPIVFVADIRRKTETLNRFCRPIMTKPKPAPAKPPTQSSPQPQPSAEAQANENANNGATPEDQAPPSEPMETDNIQTPESE*

Protein Length: 855

Fln nts: ACATGGGGGAGGCTTCTAGAATAGACACCCCCCCAACCCCCCGCCCTTCGCGAAAGAGAAAGTTTTCCCGACTCGTGCCCTCGAAACATTCATTTCTTATATAGCGCGGACAGGGAGCCGAACAGGTCCAGGAATCGATTTCTCTGGTTGGGTAGAGTTTCACAGGCAGAAGATTTTGGTGGTAAGGCGAAA_-_ATGAGCGTTGTAGGGTTTGATGTCGGAAACGAAAGCTGCATTGTTGCCGTTGCACGGCAGCGCGGCATTGATGTCGTGCTTAATGATGAATCGAAGAGGGAAACCCCGGCCATTGTCTGTTTCGGGGAGAAGCAGCGGTTTATTGGCACGGCCGGTGCCTCTTCGTCCCTGATGAATCCGAAGAACGCCGTCTCTCAGATCAAACGGTTGATCGGGAAGCAATTCCGTGATCCCGAAGTGCAGAGGGATTTGCAGAGCTTGCCGTTCACCGTCGATGAAGGGCCCGACGGGGGTGTGCGGATTCACGCGCGGTACCTTGGAGAGAATCGCGTCTTCAGCGCGACTCAGATTCTAGCCATGCTTTTGTCGAACCTTAAGCAAATTGCAAAGACAAATTTGAAAACAGAGGTTGTTGATTGTTGTATTGGGATACCAATTTATTTCACAGATCTCCAAAGAAGAGCGTTTTTGGATGCCGCTTCCATTGCGGGCCTAAATCCTCTCCGCTTGATGCACGAGACCACAGCCACTGCCTTGGCTTACGGCATTTACAAGACTGATCTGCCTGAAAATGATCCGTTGAACGTCGTGTTTGTTGATATCGGCCATGCTAGTATGCAGGTGTGTGTTGCTGCATTTAAAAAGGGCCAGTTGAAGATTCTGGCTCATACCTATGATAGATCTCTGGGTGGGAGGGATTTCGATGAGGTTCTTTTCAAGCATTTTGCTGATAAATTCAAGGAGCAATATCAGATAGACGTGCCAACTAATGTTCGAGCCAGTCAGAGATTGCGGGCTGCTTGCGAGAAGTTGAAGAAAGTCTTGAGTGCTAACCCTGAGGCACCTCTCAATATCGAGTGTTTAATGGATGAAAAAGACGTTAGGGGATTTATCAAACGGGACGAGTTTGAACAACTTGCACAACCGATGCTCGAGCGTGTGAAAGGGCCCTGCGTGCAGGCTTTGATTGAAGCAGGAATTACTGTAGATAAGATTCATGCGGTTGAAGTTGTTGGCTCGGGTTCTCGTGTTCCTGCAATATTAAAAATATTGACTGAGACTTTTGGAAAAGAACCGAGGCGGACTATGAATGCGAGCGAGTGTGTGGCTCGAGGATGTGCTCTCCAGTGTGCTATTCTTAGTCCGACATTCAAAGTGCGCGAATTCAAGGTTCAAGAAAGTTTTCCGTTCTCTATTGCTTTGGCGTGGAAGGATTCTGCTCCCGAGGCTGAAGATGGAACTTTAGAGCAACGGCAAACCAAAGTTGTGTTCCCTAGAGGCAACACATTGCCAAGTACAAAGGTTTTTACATTCTTAAGGTCTGGGACCTTCACAGTAGACATTTTATATGAAGATGTGAACCAAGTTCGGGCGCCTGCACTGATAAGTTCATACATGATTGGTCCTTTTCAGACTTCAAAAGGTGAAAAGGCTAAGCTGAAAGTAAGAGTCCAGTTGGATAAGCATGGAATAGTTTCGATTGATTCAGCAACTATGATTGAGGAAGAAGAAATAGAAGTCCCTGTTTCTAGTGTGAAAGAAGGATCAAATGACGAGAAAGAGACTGCTGCAATGGATACAGATGATGCACAAAACAATGGTGCATCTGCAGCTGGTGACAATGCTGATGTTAATATGCAGGATGCCAAAAATGCTGCTGGACCTGCAACAGCGGGAACTGCCACTGGTGCTGAAAATGGGATTCCTGAGGCAGAGGATAAAGCTGCCCAGATGGAGACTGATGCCAAGGCAAAAACTGTGAAAAAGAAGGTAAAGAAAACAGAGGTACCATTTAGTGAAAGAGTATTTGGGGCCATGCCACGGACAGATTTGCAGAAGGCTACTGATGAAGAATTTGAAATGGCTTTACAAGACCGAGTGATGGAAGAAACAAAGGAGAAAAAAAATGCAGTGGAAGCTTACGTTTATGACATGCGCAACAAGCTATATGAAAAATATCAGGCATATGTCACAGAGCCCCAGAGGGAGGAATTGACATCAAAGTTGCAGACAGTAGAAGATTGGTTGTATGATGAAGGAGAGGATGAAACAAAAGGTGTTTATGTTGCAAAGCTAGAAGAGCTCAAGAAGTTTGGTGATCCAATTGAGGAGAGGTACAAGGAGGATATGGAAAGAGGACGGGCAATCGATGAGCTTATATATTGTATTAATAGTTATAGAGAGGCAGCCCTTTCCAAAGACAAATTTGACCACATAGATATTGCTGATAAGCAGAAGGTTGTGAGCGAGTGTAGTGAAGCTGAATCCTGGCTATATGACAAAAGGCAACAGCAAGATTCCCTGCCAAAGCATGCCAATCCTATTGTTTTTGTAGCTGATATAAGAAGGAAAACGGAGACCTTGAACCGCTTTTGTAGGCCTATAATGACAAAGCCAAAACCGGCTCCTGCCAAGCCACCAACACAGTCATCACCACAACCTCAACCCTCTGCTGAAGCTCAGGCAAATGAGAATGCTAATAATGGTGCCACTCCAGAGGATCAAGCACCTCCGTCTGAGCCCATGGAGACGGACAATATTCAAACACCTGAATCCGAGTGA___CATGTCTGATTGTATTGTGTATGCTCTAGGAGTCTCCTGTTCACATTAATTATATCAGATACATTCATTTCTGATTGTCATTTTGTCTGGTTTCCAGCGTAGTTTTGTATTTCCTTCCCAAGGGAAGGATGAATAGATATGTTGCAAAATGTGAAGACGACAATGCATTTAACTCCATTTTATATTTTGGGATCTAGAAGTCTTGTTTTTAGAAGCGTTGACATTTAGTCGATAAATAGGTTGCTTCAGAGTCCCTGTCAACTCCTCTGTAAAACTTGGACACAAGAACATAATATGTTCTTAATCCATCCAGAATTTTCTCTTAGGCAACGCATGTAGTAAGTTTTTTGTATTTGGTTAGTAAAATTTTGGACAAAGGCAATCCTTGTGAAATCTTAATCTATATTGAGTATACTTATTTTTTAGTTCAACCGACGAGCAATGTTTTTCTATTTATTTTTG

Fln Alignment:

Contig18564___MIGPFQTSKGEKAKLKVRVQLDKHGIVSIDSATMXXXXXXXVPVSSVKEGSNDEKETAAMDTXXXXXXXXXXXXXXXXXXMQDAKNXXXXXXXXXXXXXENGIPEAEDKAAQMETDXXXXXXXXXXXXX-EVPFSERVFGAMPRTDLQKATDEEFEMALQDRVMEETKEKKNAVEAYVYDMRNKLYEKYQAYVTEPQREELTSKLQTVEDWLYDEGEDETKGVYVAKLEELKKFGDPIEERYKEDMERGRAIDELIYCINSYREAALSKDKFDHIDIADKQKVVSECSEAESWLYDKRQQQDSLPKHANPIVFVADIRRKTETLNRFCRPIMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATPEDQAPPSEPMETDNIQTPESE
C0PQU3_______________MIGPFQTSKGEKAKLKVRVQLDKHGIVFVDSATMIEEEEIEVPVSSGKEGSKEDKETAAMETDDAQNNGASAAGDNADVNMQDAKSAAGTATAGTSGA-ENGFPEAEDKAAQMETDAKVKTVRKKKVKKTEVPINEKIFGALPRADLQKATDEEFEMALQDRVMEETKEKKNAVEAYVYDMRNKLYEKYQAYVTESQREELTLKLQTVEDWLYDEGEDETKGVYIAKLEELKKFGDPIEERYKEDMERGRSIDELMYCINSYRTAALSKDKYDHIDIADKQKVVSECSEAETWLSDKKQQQDSLPKHANPLVLVADIRRKTETLDRFCRPIMTKPRPAPAKPPTQSPTQPQPSAEAQANENATNGATPEDQAPPAEPMETDNIQTPESE

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
499	10		90		0.90298
500		90		10	0.90298
708		80		20	0.995493
709			80	20	0.995493
822		33		66	0.997452
839			75	25	0.996473
950	66		33		0.997452
1131		28		71	1.0
1248		71		28	1.0
1496	3			84	1.0
1541	95		4		0.997494
1739		87		12	1.0
2083	90		10		0.90298
2116		33		66	1.0
2173		40		60	1.0
2215		66		33	1.0
2224		16		83	0.994512
2254	14			85	0.993533
2933	11			88	1.0
3091		9	90		1.0
3181	66		8		1.0
3184		27		72	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain