SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18559

Length: 1322 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18559

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative phosphate transporter n=1 Tax=Cryptomeria japonica RepID=Q1XG57_CRYJA	-	-	63%
FL-Next	tr=Putative phosphate transporter; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	70%
Sma3	H(+)/Pi cotransporter	-	-	-

Source	Gene names
Sma3	5K14.7; APT1; APT2; At1g20860; At1g76430; At2g32830; At2g38940; At3g54700; At4g08895; At5g43340; At5g43350; At5g43360; At5g43370; EcPT1; EcPT2; EcPT3; EcPT4; EcPT5; EdPT1; F14G6.3; F15M4.7; F24L7.3; F9H16.16; GSVIVT00002927001; GSVIVT00006480001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	inorganic phosphate transmembrane transporter activity	GO:0005315	Molecular Function	-
Sma3	symporter activity	GO:0015293	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	phosphate ion transport	GO:0006817	Biological Process	-
Sma3	cellular response to phosphate starvation	GO:0016036	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Phosphate permease	IPR004738	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G32830.1	" PHT5, PHT1;5 phosphate transporter 1;5 chr2:13927754-13929657 REVERSE LENGTH=542"	71%
RefSeq	Arabidopsis thaliana	NP_180842.1	putative inorganic phosphate transporter 1-5 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002315705.1	high affinity inorganic phosphate transporter [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q1XG57

Fln msg: your sequence is shorter than subject: 384 - 544

Fln protein: IAAVFAMQGFGILTGGAVSIIVAASFNKAYPRPTFEENPGLSTAPQADFVWRIILMFGAIPALLTYYWRLKMPETARYTALVAKNTKLAASDMAKVLQVDIEEQAPETAKAAGNDQFGLFSREFARRHGLHLLGTTTTWFLLDIAFYSNNLFQKDIYTAVGWLPAAKKMNAIHEVYKVARAQSLIALCATVPGYWFTVALIDRIGRFAIQLMGFFFMTVFMFALAIPYYHWRGHTCDSGYCGGQHTTFVIMYSLTFFFANFGPNSTTFIVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSTHEKETDTGYPTGIGIKKSLLLLAVICAMGFFFTFLTPETKGRSLEEITGENDDEQDKGQELHSGRFSNNRTTPA*

Protein Length: 385

Fln nts: CATTGCCGCGGTGTTCGCTATGCAGGGCTTCGGCATCTTGACCGGAGGCGCGGTGTCCATCATCGTGGCCGCGTCGTTCAACAAGGCGTACCCTCGGCCCACGTTTGAAGAAAACCCGGGGCTGTCTACTGCCCCGCAGGCGGACTTCGTGTGGAGAATAATCCTCATGTTCGGAGCCATCCCAGCGTTGCTCACTTATTACTGGCGTCTCAAGATGCCGGAGACGGCTCGATACACGGCGCTCGTGGCCAAGAACACGAAGCTGGCCGCTTCCGACATGGCCAAGGTTTTGCAGGTCGACATCGAGGAACAGGCGCCGGAAACGGCAAAGGCTGCCGGAAATGACCAATTCGGGCTGTTTTCCAGAGAATTCGCAAGGCGCCACGGGCTTCATCTTCTGGGGACGACGACCACATGGTTTCTTCTGGACATAGCCTTTTACAGCAACAACCTTTTCCAGAAAGACATCTACACGGCCGTCGGATGGCTTCCCGCCGCCAAGAAAATGAACGCCATACACGAAGTGTACAAGGTAGCCAGAGCCCAGTCGCTCATTGCTCTCTGCGCAACGGTGCCCGGCTACTGGTTCACCGTGGCTCTCATAGACCGCATAGGCAGGTTCGCCATTCAGCTCATGGGCTTCTTCTTCATGACGGTTTTCATGTTCGCTCTTGCAATTCCATACTACCATTGGCGAGGGCACACCTGCGACAGTGGCTACTGCGGCGGACAACACACGACCTTCGTGATCATGTACTCGCTTACATTTTTCTTCGCCAATTTCGGGCCAAACAGTACCACTTTCATAGTGCCCGCCGAAATCTTTCCGGCCAGATTGCGCTCGACGTGCCACGGCATCTCGGCTGCAGCTGGGAAGGCGGGGGCCATCGTGGGAGCGTTTGGGTTCCTCTACGCTGCGCAGAGCACGCATGAAAAGGAGACAGATACAGGTTACCCCACGGGAATAGGAATCAAGAAATCTCTGCTGCTTCTTGCTGTTATCTGCGCCATGGGTTTTTTCTTCACGTTTCTAACTCCGGAGACGAAGGGCAGATCTCTTGAGGAGATCACAGGTGAAAATGATGATGAGCAGGACAAGGGACAAGAGCTTCATTCCGGTCGCTTTAGCAATAATAGAACCACGCCTGCTTAG___AAAGATCGTGGGTACTGTCTTAGGTTTCACTCTTTTGTAATTTGCAGTAAGGGTTTCACTATATTGCTGCAATATCAGAGCCTCTATGTATGGGGCTCTGCACTAAAAGATCCATCACAATTGTCTTCGATATTTCCGTATAATTCCAACTCTGCATCTAAACAGTGGA

Fln Alignment:

Contig18559___IAAVFAMQGFGILTGGAVSIIVAASFNKAYPRPTFEENPGLSTAPQADFVWRIILMFGAIPALLTYYWRLKMPETARYTALVAKNTKLAASDMAKVLQVDIEEQAPETAKAAGND-QFGLFSREFARRXXXXXXXXXXXWFLLDIAFYSNNLFQKDIYTAVGWLPAAKKMNAIHEVYKVARAQSLIALCATVPGYWFTVALIDRIGRFAIQLMGFFFMTVFMFALAIPYYHWRGHTCDSGYCGGQHTTFVIMYSLTFFFANFGPNSTTFIVPAEIFPARLRSTCHXXXXXXXXXXXXXXXXXXLYAAQSTHEKETDTGYPTGIGIKKSLLLLAVICAMGFFFTFLTPETKGRSLEEITGENDDEQDKGQELHSGRFSNNRTTPA
Q1XG57_______________IAAVFAMQGFGILAGGAVSIIVSAGFKSHFKAPAYQDDPKGSTVDEADFVWRLILMFGAVPAAMTYYWRMKMPETARYTALVERNAKQAAADMSRVMQVDIEEDRQKIDEIATREPSFGLFSAQFAKRHGLHLLGTTSTWLLLDVAYYSQNLFQKDIFTAIGWIPAGKKMNAIEEVYRIAKAQTLIALCSTVPGYWFTVFFIDRIGRFTIQLMGFFFMTVFMFALAIPYNHWRGTKCGDDYCDGNHIAFVVLYSFTFFFANFGPNATTFIVPAEVFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSTHQSEVDHGYHKGIGVKNSLILLGVTNAMGFLFTFLVPETNGKSLEELSGEN--EEDEGTELPPS-VSTTRTAPA

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
692			16	83	0.994512
728	16		83		0.994512
729		16	83		0.994512
808	80	20			1.0
847			40	60	1.0
910		81	18		0.999994
932	55		44		1.0
933	88	11			0.923564
935	88			11	0.923564
936	88			11	0.923564
943	37			62	1.0
950		12	87		0.992554
951	12		87		0.992554
980			50	50	1.0
998	40		60		1.0
1012			80	20	0.995493
1039	16		83		0.994512
1057		16		83	0.994512
1073	33		66		0.997452
1099	33		66		0.997452
1100	66			33	0.997452
1101			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain