SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18525

Length: 3392 nt

UniGene Fasta

>sp_v3.0_unigene18525
CGTCGTGACCTTGGCTGTCACTCAATCTCTGACTAATTGTTAACGGAGTTTTGTACGCGAAATCGACGCGGCATGCGCGTGGGTAAATCCGTCGCAAGGAAGAGTCCTTGTCCACAGGTTGCTTCCGACTGGTCTCGATCCATTGCTTGCCGCCCTCCTCTGTCATCTTTTTGGATATTTAACCGCCTATAGAAGTAGCAATCCTGCGCGTTTCTCTGCGTTCTTAGCTCCCAAAGCGGAGAAACTGTGCATCTGAAATTCCCCTTTCCTTCCTCTTTATTTAGACCTCAAAGATTTCTGTGCTTTCGACCTCTTTCGACCTCAAAGATCGACGGAGTGTGGCTGCTTTTAGCAAATAACGGAGGTTGTCTGTGGTACAGCCGGTTTAGGCTCAAGACGGCGATATCTAAAGTATATCGGACAGAATTCGGCGCTGATCCGGCTTCTTTCAGGAATTTTCCCGCCTCGCATCTACCCCAGTGGCCATTGATTTTTGGTGTGCCTTGCTTTTCACTCTGGCCGCTACTGTAGGTTCCTTTTCTCGCACCTCAAAGGTGTGGGGACGAGCTGGGGTTTTGATTGCTCCGGTTTCTCACTCACAATCAAGGAGTTCACATGTTTGGAGATGGTGTCGTATGGTACAAGGACTTTCGCTTGATTATGGCTAATGCATTTTAAACTTGGATCGAATCTGCAGCAAGCATCAATGTAGAAGTTCTGTAGGAGTTTTCTGGGATAATAAAGTGTCCTAGCCCAGTGTTATATTGGCCGAAAGGATTTTATTATTTGGAAGGCCAAGACTAAGTTGAAATCTTCAGGGAGCTTGAACTAATAAACAGATTTTTTACTATTTAAATGGCTAGATTATTTACAATGGGGAAGCTGACATGTTTTTCAATCTTTGCCAAGAAGAACAAGGTGAAGTATGAAAGGCCCTTATCTGAGGACACCAAGCATCGTATTGAGCCATGCCAAAATGGTTCTTCCAAGAGCATCAATATTGATGGAGCATTACATTCTGACTTGCAGAACTTATCCACATGTGCTAAGGAAACGGTGGATCATAAGGATTTGATGACAATAGAACCTTTGAATGGCTCAAATGATGTACTTGGTAGAGGAGATTGTTCGGCTGAGTCTGTTGTTGATAAGCATCAGGCCAAATCTATGTTCGGTAGACAGGAAGGGCAATTCAATGGCACTGGGTCAGATTGTGACTTCAGCTTTGGACCACAAAAAGCCATAACGTGCAATGAAACTCCTTCAGAGATTGCTTATGAAGGTGAGGACGAGGAGGAAAATCATTCATCTTCCAGAGAGCTGTCTGACCATGAAAGTCAGAAAAATATGGACAATGTTGTAAATTCTGAGTTCCCTACAGATGTAAATACTAATACTTCTGGTACAGTGGCCTTATGTGACTACTCTTCTGAAATTACCTTTGAGATTGATCCTAAGTGTGATGGAGACCAGTATAATGAGAAAATGCAGAGTGGTCACCTTAGTGACCCTGGAGTTTATAAAATGGGGGATTTGGATTCTGGATTTACTTCACCTGTTCTTTATCGATCTAGCTCAGGATCAAAGCTGGAAATGTCAAAGTTATACAAGTTTGAATGTGGTGGAAGAAGTCCAGATAACCACTCGACTCAGTTGCCACCATCTAATTCACAGTCTTTTGAAGATCTGCAGCATTTAACTGGTGTTCAAGGGGGGATTCAAGGAAGCCCTCATTCTGAATTGACATACTGTAGTGCTGACAAGGTAATGCTCAAGCGGGGATCTTCCAGCAAAGTTCTTCCTTCAAGAAGGCGCAAAGACTGGTGGAAGATATTTTTATGGAGCCACAGGAATTCACACGAGGGGATTCAGAGTGAACAAAGTCCTCGGCTGCACAAAAGTGAGGAAGCATACCAAATCATGCATAAAAAGGGAGGTTATTCCTCAGATACCGGTGAACCATCGAGAAATATGCATCAGACTAACCATGAAGATATAGAAAAGTTGACATCTTTGGAGGACATTAACACAATAAATGGCCTTAGTAAAAAACAAAATATTTCGAACTCACAAAGTAGACACAAGGATTGGGATCATCTGTCTAGAGATCCTAGTTCTCAGTCTTACAACCAATGGATGGCTTTTTCATCTGAACAATCCAATATAACACGCGTGGAGGAGTGGATTACCAGCATAGATACAGGGTCTCTCTCTCTTGAAAATGGGGATTCTTTACATGAAAACGACTTTTCTAATCCTGGAGGTACAGTAGCTGGTAATTCTGCTGCTGAAATTTCAAAGGTACTTTTGGAGACCAGTTTCCCAGATGGTAATTTGCCTGAAGAAATGCAGCTAGCCAATAATGCCATTCGGTCGCTAAATGCTTTTTCAACTGTGGCACACATTTCTGGTATTGGTTTGAGAGTGATACCAGCTCTTGCACCATTTACCAGCCTTCGGACCATAAATTTGTCAGGAAACTCCATAGTGCGTATTGCCTCAGGATCTCTGCCAAAAAGTCTTCATGTATTGGATTTATCTAGGAACAAAATTACTGCAATTGAAGGGCTTAGAGAACTAAGTCGGCTGCGTGTTCTTGATCTCAGCTACAATAAGATATCCCGAATCGGTCATGGTTTGGCTAATTGTACATTGATAAAGGAGTTATGCCTGGCTGGTAACAAGATAAGTGATGTTGAAGGTCTTCATCGATTATTGAAGCTGGCAGTTTTAGACCTGAGCTTCAACAAAGTAACCACAATGAAAGCTCTTGGTCAGCTTGCAGCCAATTATAATTCTTTATTGGCTCTCAACCTTTTAGGGAATCCAGTACATACAAATGTTGGTGAAGAGCAACTTAGAAAATCAATATCAAGTCTTCTTCCTCGCCTTGCATATTTCAACAAGCAACCAATTAAAACAGTTTATGCACGAGAAGCGGCTGTTGATAGTGTTGCTAGGGCTGCTATGGGGAACACTGGACGGCATTCCCGCAATAAGGTTTCAAAGAGGGGAAGCTATGCATCGTCGAGTAGTCATAAAGGTGGAGCTTCTTCCATCCGTGGGAACCGTGCCAGTGAAGGAACAGGTCGCAATCGTGTCCGGCAGAATAAGCATGTCCATGATAAGGGGAAGAGCAGACAGGAACATCTACCTTCTAAAAGAACCCCCAGTGCTTCATTTTCTGATCTTCAGAAGCTAGGCACTGCAAAGTCAGTGAATGCACATTAGCTGGAGGGAGGGGAACTTGCAAAATATTAAGTAAGACAACCTTTTATTGAGAGAGATCTTCCGGTTGAATTGTGTCATATATCTTTATTAAACATTTGACTGGTTTTAATTGTTTCTAGTGTATTTCTTTTTCTATAATTTTTTAAATAAAGCAGTAGCTG

Ace file of the UniGene sp_v3.0_unigene18525

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RJL3_RICCO	-	-	0.0	43%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	46%
Sma3	Protein binding protein	-	-	3.006e-08	-

Source	Gene names
Sma3	AT4g03260; At1g78230; At4g03260; F4C21.19; GSVIVT00015224001; GSVIVT00029227001; LOC_Os03g09070; LOC_Os10g22980; OJ1217B09.19; OSJNBa0017K09.7; OSJNBa0095C06.5; Os03g0190300; Os05g0501600; Os10g0376200; OsI_10329; OsI_20514; OsI_24596; OsI_33306; OsJ_0972

Source	GOs	Term	Type	e value	Identity
Sma3	vacuole	GO:0005773	Cellular Component	0.0	-
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6H0Q4

Fln msg: your sequence is longer than subject: 792 - 685

Fln protein: MARLFTMGKLTCFSIFAKKNKVKYERPLSEDTKHRIEPCQNGSSKSINIDGALHSDLQNLSTCAKETVDHKDLMTIEPLNGSNDVLGRGDCSAESVVDKHQAKSMFGRQEGQFNGTGSDCDFSFGPQKAITCNETPSEIAYEGEDEEENHSSSRELSDHESQKNMDNVVNSEFPTDVNTNTSGTVALCDYSSEITFEIDPKCDGDQYNEKMQSGHLSDPGVYKMGDLDSGFTSPVLYRSSSGSKLEMSKLYKFECGGRSPDNHSTQLPPSNSQSFEDLQHLTGVQGGIQGSPHSELTYCSADKVMLKRGSSSKVLPSRRRKDWWKIFLWSHRNSHEGIQSEQSPRLHKSEEAYQIMHKKGGYSSDTGEPSRNMHQTNHEDIEKLTSLEDINTINGLSKKQNISNSQSRHKDWDHLSRDPSSQSYNQWMAFSSEQSNITRVEEWITSIDTGSLSLENGDSLHENDFSNPGGTVAGNSAAEISKVLLETSFPDGNLPEEMQLANNAIRSLNAFSTVAHISGIGLRVIPALAPFTSLRTINLSGNSIVRIASGSLPKSLHVLDLSRNKITAIEGLRELSRLRVLDLSYNKISRIGHGLANCTLIKELCLAGNKISDVEGLHRLLKLAVLDLSFNKVTTMKALGQLAANYNSLLALNLLGNPVHTNVGEEQLRKSISSLLPRLAYFNKQPIKTVYAREAAVDSVARAAMGNTGRHSRNKVSKRGSYASSSSHKGGASSIRGNRASEGTGRNRVRQNKHVHDKGKSRQEHLPSKRTPSASFSDLQKLGTAKSVNAH*

Protein Length: 793

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTCTGACTAATTGTTAACGGAGTTTTGTACGCGAAATCGACGCGGCATGCGCGTGGGTAAATCCGTCGCAAGGAAGAGTCCTTGTCCACAGGTTGCTTCCGACTGGTCTCGATCCATTGCTTGCCGCCCTCCTCTGTCATCTTTTTGGATATTTAACCGCCTATAGAAGTAGCAATCCTGCGCGTTTCTCTGCGTTCTTAGCTCCCAAAGCGGAGAAACTGTGCATCTGAAATTCCCCTTTCCTTCCTCTTTATTTAGACCTCAAAGATTTCTGTGCTTTCGACCTCTTTCGACCTCAAAGATCGACGGAGTGTGGCTGCTTTTAGCAAATAACGGAGGTTGTCTGTGGTACAGCCGGTTTAGGCTCAAGACGGCGATATCTAAAGTATATCGGACAGAATTCGGCGCTGATCCGGCTTCTTTCAGGAATTTTCCCGCCTCGCATCTACCCCAGTGGCCATTGATTTTTGGTGTGCCTTGCTTTTCACTCTGGCCGCTACTGTAGGTTCCTTTTCTCGCACCTCAAAGGTGTGGGGACGAGCTGGGGTTTTGATTGCTCCGGTTTCTCACTCACAATCAAGGAGTTCACATGTTTGGAGATGGTGTCGTATGGTACAAGGACTTTCGCTTGATTATGGCTAATGCATTTTAAACTTGGATCGAATCTGCAGCAAGCATCAATGTAGAAGTTCTGTAGGAGTTTTCTGGGATAATAAAGTGTCCTAGCCCAGTGTTATATTGGCCGAAAGGATTTTATTATTTGGAAGGCCAAGACTAAGTTGAAATCTTCAGGGAGCTTGAACTAATAAACAGATTTTTTACTATTTAA_-_ATGGCTAGATTATTTACAATGGGGAAGCTGACATGTTTTTCAATCTTTGCCAAGAAGAACAAGGTGAAGTATGAAAGGCCCTTATCTGAGGACACCAAGCATCGTATTGAGCCATGCCAAAATGGTTCTTCCAAGAGCATCAATATTGATGGAGCATTACATTCTGACTTGCAGAACTTATCCACATGTGCTAAGGAAACGGTGGATCATAAGGATTTGATGACAATAGAACCTTTGAATGGCTCAAATGATGTACTTGGTAGAGGAGATTGTTCGGCTGAGTCTGTTGTTGATAAGCATCAGGCCAAATCTATGTTCGGTAGACAGGAAGGGCAATTCAATGGCACTGGGTCAGATTGTGACTTCAGCTTTGGACCACAAAAAGCCATAACGTGCAATGAAACTCCTTCAGAGATTGCTTATGAAGGTGAGGACGAGGAGGAAAATCATTCATCTTCCAGAGAGCTGTCTGACCATGAAAGTCAGAAAAATATGGACAATGTTGTAAATTCTGAGTTCCCTACAGATGTAAATACTAATACTTCTGGTACAGTGGCCTTATGTGACTACTCTTCTGAAATTACCTTTGAGATTGATCCTAAGTGTGATGGAGACCAGTATAATGAGAAAATGCAGAGTGGTCACCTTAGTGACCCTGGAGTTTATAAAATGGGGGATTTGGATTCTGGATTTACTTCACCTGTTCTTTATCGATCTAGCTCAGGATCAAAGCTGGAAATGTCAAAGTTATACAAGTTTGAATGTGGTGGAAGAAGTCCAGATAACCACTCGACTCAGTTGCCACCATCTAATTCACAGTCTTTTGAAGATCTGCAGCATTTAACTGGTGTTCAAGGGGGGATTCAAGGAAGCCCTCATTCTGAATTGACATACTGTAGTGCTGACAAGGTAATGCTCAAGCGGGGATCTTCCAGCAAAGTTCTTCCTTCAAGAAGGCGCAAAGACTGGTGGAAGATATTTTTATGGAGCCACAGGAATTCACACGAGGGGATTCAGAGTGAACAAAGTCCTCGGCTGCACAAAAGTGAGGAAGCATACCAAATCATGCATAAAAAGGGAGGTTATTCCTCAGATACCGGTGAACCATCGAGAAATATGCATCAGACTAACCATGAAGATATAGAAAAGTTGACATCTTTGGAGGACATTAACACAATAAATGGCCTTAGTAAAAAACAAAATATTTCGAACTCACAAAGTAGACACAAGGATTGGGATCATCTGTCTAGAGATCCTAGTTCTCAGTCTTACAACCAATGGATGGCTTTTTCATCTGAACAATCCAATATAACACGCGTGGAGGAGTGGATTACCAGCATAGATACAGGGTCTCTCTCTCTTGAAAATGGGGATTCTTTACATGAAAACGACTTTTCTAATCCTGGAGGTACAGTAGCTGGTAATTCTGCTGCTGAAATTTCAAAGGTACTTTTGGAGACCAGTTTCCCAGATGGTAATTTGCCTGAAGAAATGCAGCTAGCCAATAATGCCATTCGGTCGCTAAATGCTTTTTCAACTGTGGCACACATTTCTGGTATTGGTTTGAGAGTGATACCAGCTCTTGCACCATTTACCAGCCTTCGGACCATAAATTTGTCAGGAAACTCCATAGTGCGTATTGCCTCAGGATCTCTGCCAAAAAGTCTTCATGTATTGGATTTATCTAGGAACAAAATTACTGCAATTGAAGGGCTTAGAGAACTAAGTCGGCTGCGTGTTCTTGATCTCAGCTACAATAAGATATCCCGAATCGGTCATGGTTTGGCTAATTGTACATTGATAAAGGAGTTATGCCTGGCTGGTAACAAGATAAGTGATGTTGAAGGTCTTCATCGATTATTGAAGCTGGCAGTTTTAGACCTGAGCTTCAACAAAGTAACCACAATGAAAGCTCTTGGTCAGCTTGCAGCCAATTATAATTCTTTATTGGCTCTCAACCTTTTAGGGAATCCAGTACATACAAATGTTGGTGAAGAGCAACTTAGAAAATCAATATCAAGTCTTCTTCCTCGCCTTGCATATTTCAACAAGCAACCAATTAAAACAGTTTATGCACGAGAAGCGGCTGTTGATAGTGTTGCTAGGGCTGCTATGGGGAACACTGGACGGCATTCCCGCAATAAGGTTTCAAAGAGGGGAAGCTATGCATCGTCGAGTAGTCATAAAGGTGGAGCTTCTTCCATCCGTGGGAACCGTGCCAGTGAAGGAACAGGTCGCAATCGTGTCCGGCAGAATAAGCATGTCCATGATAAGGGGAAGAGCAGACAGGAACATCTACCTTCTAAAAGAACCCCCAGTGCTTCATTTTCTGATCTTCAGAAGCTAGGCACTGCAAAGTCAGTGAATGCACATTAG___CTGGAGGGAGGGGAACTTGCAAAATATTAAGTAAGACAACCTTTTATTGAGAGAGATCTTCCGGTTGAATTGTGTCATATATCTTTATTAAACATTTGACTGGTTTTAATTGTTTCTAGTGTATTTCTTTTTCTATAATTTTTTAAATAAAGCAGTAGCTG

Fln Alignment:

Contig18525___EIAYEGEDEEENHSS-SRELSDHESQKNMDNVVNSEFPT-DVNTNTSGTVALCDYSSEITFEIDPKCDGDQYNEKMQSGHLSDPGVYKMGDLDSGFTSPVLYRSSSGSKLEMSKLYKFECGGRSPDNHSTQLPPSNSQSFEDLQHLT-GVQGGI----QGSPHSELTYCSADKVMLKRGSSSKVLPSRRRKDWWKIFLWSHRNSHEGIQSEQSPRLHKSEEAYQIMHKKGGYSSDTGEPSRNMHQTNHEDIEKLTSLEDINTINGLSKKQNISNSQSRHKDWDHL-SRDPSSQSYNQWMAFSSEQSNITRVEEWITSIDTGSLSLENGDSLHENDFSNPGGTVAGNSAAEISKVLLETSFPDGNLPEEMQLANNAIRSLNAFSTVAHISGIGLRVIPALAPFTSLRTINLSGNSIVRIASGSLPKSLHVLDLSRNKITAIEGLRELSRLRVLDLSYNKISRIGHGLANCTLIKELCLAGNKISDVEGLHRLLKLAVLDLSFNKVTTMKALGQXXXXXXXXXXXXXXGNPVHTNVGEEQLRKSISSLLPRLAYFNKQPIKTVYAREAAVDSVARAAMGNTGRHSRNKVXXXXXXXXXXXXXXXXXXIRGNRASEGTGRNRVRQNKHVHDKGKSRQEHLPSKRTPSASFS
F6H0Q4_______________EVAYEGEDEHEDNSSIKRELSDFDLQTHVANAGEEEFQLRHRNMNYSDSF---DIEVNGQFEDRAEKDAEKGVDMIQNGHVSDPGIPKA----DFWASPKLKRSCSN--LESRDVLKKIAG---------QLPPSKSHSFEELQGLADGAREDVFPRNPGSPGSVLSRRSADRVMLKKRSSSQVLPSRSRRLWWKLFLWSHRNLHKPWTTKPRPL-----PIAAAFNQQGGYCSDTLEPNRAL---------QLSELESPGSFTG-------NNHPNDNQSWDGFHGRTSGLWPQNHWVAFSAESSPFARVDEWVKDLETQPPLPVDNDDNNVEDIIFPPSPETGRSPARSTAHL--TRHPNTNLSEEILHANSVIQSLNSSSTVAHISGIGLKVIPTISHFSSLRSVNLSSNYIVHITPGSLPKGLHILNLSRNKISTIEGLRELTRLRVLDLSYNRISRIGHGLSNCTLIKELYLAGNKISDVEALHRLLKLTVLDLSFNKITTTKSLGQLVANYNSLLALNLLGNPIQSNISDDQIRKAVGSLLPKLAYLNKQPIKPQRAREVATDSVAKAALGYSGQSSRRRAVKRVSQGGSLVS-------SGHRSSASVGHKS-------RTRSKSRTHHQSPLKTSSSALA

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
378		88		11	0.923564
439	10	90			0.90298
441	10		90		0.90298
442			90	10	0.90298
443		88		11	0.923564
1820	75		25		0.996473
1989	14			85	0.999981
2159		90	10		0.90298
2160		90	10		0.90298
2161	90		10		0.90298
2556		10		90	0.90298
3293		66		33	1.0
3305		11	52		1.0
3339	57			42	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain