SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18471

Length: 1921 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18471

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	translation initiation factor eIF-3 subunit 3 [Arabidopsis thaliana] sp\|Q9C5Z2.2\|EIF3H_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit H; Short=eIF3h; AltName: Full=Eukaryotic translation initiation factor 3 subunit 3; AltName: Full	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	JAB1/Mov34/MPN/PAD-1	IPR000555	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G10840.1	TIF3H1 translation initiation factor 3 subunit H1 chr1:3607885-3610299 REVERSE LENGTH=337	77%
RefSeq	Arabidopsis thaliana	NP_563880.1	translation initiation factor eIF-3 subunit 3 [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002320437.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXP5

Fln msg:

Fln protein: MAEFMAQTGMRSFAQAAATEEVAAPLRSVQIDGLVVLKIIKHCKECSTALVTGQLLGLDIGSVLEVTNCFPFPSRGAEEEDEADADGANYQLEMMRCLREVNVDNNTVGWYQSTLMGSFQTVELIETFMNYQENIRRCVCIIYDPERSGQGVLAMKALKLQDTFMDLYKSNDFTGEKLREKNLTWVDIFEEIPVKISNSVLVSSIMAELETDSPVSQGDYDRLVLSTNPFMEKNLEFLIDCMDDLSMEQQKFQYYYRNLSRQQSQQQAWLQKRRADNMARKAAGEEPLPEEDSSNPLFKPIIEPSRLESYLITNQVANYCDQIKGFSGQSFSKLYLMEGVHKS*

Protein Length: 345

Fln nts: ATAGTACCAAAACCTCCATATGACCATACTCCAATTTCCCGCTTCATTAACAAGGCAAACTATAGATAGAGAAAACAAACACTTCAACACATACTCGCGGCTTCCACCAGATACGCTCTGTTTTCTCTTTTCCCCGGCATTGCAACTCGCTTCTGTTCATTGATTCGGTCTGCACCACAGCC_-_ATGGCGGAATTCATGGCGCAAACTGGGATGAGGTCGTTTGCACAAGCTGCTGCCACGGAAGAGGTGGCCGCTCCACTCAGATCGGTTCAGATTGATGGATTGGTCGTTTTGAAAATCATAAAGCATTGCAAAGAATGTTCAACTGCTCTTGTCACCGGGCAACTTTTGGGTTTGGATATTGGAAGCGTTCTGGAGGTCACCAACTGTTTCCCATTCCCGAGCCGGGGAGCGGAAGAGGAAGATGAAGCCGATGCTGATGGGGCAAATTATCAACTTGAAATGATGCGATGCCTGAGAGAAGTGAATGTCGATAACAACACTGTTGGATGGTACCAGTCAACTTTAATGGGTTCCTTTCAAACTGTGGAACTAATTGAGACGTTTATGAATTACCAGGAGAATATCAGAAGATGCGTCTGTATTATTTACGACCCAGAACGTTCAGGACAGGGCGTTTTGGCAATGAAGGCGCTGAAGCTTCAAGACACTTTCATGGATCTCTATAAGAGTAACGATTTCACTGGAGAAAAGTTGAGGGAGAAGAATTTGACGTGGGTGGATATATTTGAGGAGATTCCTGTTAAAATTTCAAACTCTGTACTTGTTAGTTCTATTATGGCTGAGTTGGAAACTGATTCACCTGTTTCTCAGGGTGACTACGACAGGCTGGTTTTGTCCACAAATCCTTTTATGGAAAAAAATCTGGAGTTTTTAATCGATTGCATGGATGATCTTTCCATGGAACAACAGAAGTTCCAATATTATTATCGTAATCTTTCACGACAACAATCTCAGCAGCAGGCTTGGTTGCAAAAAAGAAGAGCAGACAACATGGCACGTAAAGCTGCTGGTGAGGAACCATTACCTGAAGAGGATTCTTCAAACCCTCTCTTCAAGCCAATTATTGAACCCTCTAGACTTGAGAGCTATCTCATCACCAATCAAGTTGCCAACTACTGTGACCAAATAAAGGGGTTTTCTGGACAGAGTTTCAGCAAACTTTATCTGATGGAAGGAGTTCACAAGAGTTGA___ATATCTGATCGCGGCCATTTTGAAATAGCAATGGAGGATTTTTAATTAGTTGTAATTGAAATTGACGAGAGAGCACAAGCTTTTTTAATCTCGCAAATTGAAATTGATGAGAGCACAAGCTTTTTTAATCTCGCAAATTGGAACTCCTACATAAATTATACCGAGATGTGGAGTTAGGGTTCTGGCCAAAGGAGATGCGAGTTAGATACAGTTCACGAGTCCCCAGTTTTGAATTGTGGTTCATAGCAGATGGTTTTGTGATTGAATTATTATTGTTTTTAAAATTTACAATGACATTATTTTTCTTACTCTAGATAGCAGCACTGCAATCATAGTGTTGCTTGCAACATGTTGTCCTCGTAGATAAAATGCTAGTGTCTCAATTTCGTAATTAGGGACGTTGCCATTGAAGCTGGTAACAAGTCCTTTTCGATTCAGTGCCGTGGATTCTCTTCCATTTTCACGTGGAAAGACCTGACAATGCTGGAAGGCTTGAAACACTGGCAATGAATATGAAAAGCAATCTTATCAATTTGAATGTGATTTAGTCAGTAAATTGCTGGTCCATCGGGCAAACTTGCTATGTTTATTGCCTGATTTCTAGAAAATTACCATGACAATGATATTTTACAAAACTAAAAGATTTGCTATCTGCGATGACTGGAAAATTCACAATTTAAAGAGAACTTCCGAAACCGTCAGTATAC

Fln Alignment:

Contig18471___MAQTGMRSFXXXXXXXXXXXPLRSVQIDGLVVLKIIKHCKECSTALVTGQLLGLDIGSVLEVTNCFPFPSRXXXXXXXXXXXXXNYQLEMMRCLREVNVDNNTVGWYQSTLMGSFQTVELIETFMNYQENIRRCVCIIYDPERSGQGVLAMKALKLQDTFMDLYKSNDFTGEKLREKNLTWVDIFEEIPVKISNSVLVSSIMAELETDSPVSQGDYDRLVLSTNPFMEKNLEFLIDCMDDLSMEQQKFXXXXXXXXXXXXXXXXXXXXXXADNMARKAAGEEPLPEEDSSNPLFKPIIEPSRLESYLITNQVANYCDQIKGFSGQSFSKLYLMEGVHKS
A9NXP5_______________MAQIGVRSFAQAAASEEVAAPLRSVQIDGLVVLKIIKHCKECSTALVTGQLLGLDIGSVLEVTNCFPFPSRGTEEEDEADADGANYQLEMMRCLREVNVDNNTVGWYQSTLMGSFQTVELIETFMNYQENIRRCVCIIYDPERSGQGVLAMKALKLQDTFMDLYKSNDFTGEKLREKNLTWVDIFEEIPVKISNSALVSSIMAELETDSPVSQGDYDRLVLSTNPFMEKNLEFLIDCMDDLSMEQQKFQYYYRNLSRQQSQQQAWLQKRRADNMARKAAGEEPLPEEDPSNPVFKPIIEPSRLESYLITNQVSNYCDQIKGFSGQSFSKLYLMEGVHKS

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1278	75		25		1.0
1421	80		20		0.999996
1439	10		90		0.90298
1441		90		10	0.90298
1472	77		22		0.999999
1788		10		90	0.90298
1857		12		87	0.992554
1864			12	87	0.992554
1867	28		71		1.0
1915	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain