SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18428

Length: 1081 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18428

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS-LRR disease resistance protein homologue n=2 Tax=Hordeum vulgare RepID=Q84KC6_HORVU	-	-	9.0e-25	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB91

Fln msg: Separated hits, possible frame ERROR between 138 and 143, atg_distance in limit (1-15): atg_distance = 1, W2: There is no M at the beginning, your sequence is shorter than subject: 354 - 482

Fln protein: LDLGSCGKLERLPDSFGSLSNLHSLDLGGCWKLERLPDSFGSLSSxxxYFDASRCANLTISSEAFGNIRTLEHIDLSGCENVEVWPSQLGHQMSLKVVKLIGTNLKKELPSAFELPSDLEVLWIANPSRETVMPSLGDLRKLKELRLEYRGELKCLSASVEGSSQLSWLKVAGSPIIHTSEVLSDEVVYPNLKELMLEECINLVEIGTLPEALTHVELSSCYNLRSIEGLCGLPMLRELHIEKCNELEELRSVETMVSLESLEVEGCLKLKSIRDLAQLTKLYSVSVAGCPQLGELEGVECCQSLWDLGVYSCPKLGWDESLVERLRQQCTHVFGDVFGEEPETDESEEPNGS*

Protein Length: 355

Fln nts: TTGGACCTGGGTTCGTGCGGGAAATTGGAGAGGCTGCCAGATTCTTTCGGCAGCTTGTCGAACCTCCACAGCTTGGACCTGGGTGGGTGCTGGAAATTGGAGAGGCTGCCAGATTCTTTCGGGAGTTTAAGTAGCCTxxxxxxATATTTTGATGCTTCCCGTTGTGCTAATTTAACAATCTCAAGCGAAGCTTTTGGAAATATAAGAACCCTCGAGCATATAGATCTTTCCGGCTGTGAAAACGTTGAAGTATGGCCCTCGCAACTGGGGCATCAAATGTCCCTGAAAGTAGTGAAGTTGATTGGCACAAATTTGAAGAAAGAATTGCCAAGTGCTTTTGAACTCCCCAGTGATTTAGAAGTTCTGTGGATAGCAAACCCTTCGCGGGAGACGGTGATGCCTTCGCTGGGTGACTTACGGAAGTTGAAGGAATTGCGTCTCGAGTATCGCGGGGAATTGAAGTGTTTGTCGGCATCAGTTGAAGGGTCGAGTCAGTTGAGTTGGTTGAAAGTGGCTGGTTCTCCCATAATCCACACATCAGAGGTATTATCTGATGAAGTTGTATACCCCAACCTCAAGGAGTTAATGTTAGAGGAGTGCATTAACCTGGTGGAGATTGGAACATTACCAGAGGCACTCACCCATGTGGAATTGAGTAGCTGTTATAATCTAAGAAGTATAGAAGGCCTTTGTGGTCTTCCAATGCTCCGAGAGTTGCACATTGAAAAGTGTAACGAACTTGAGGAGCTGCGGAGTGTTGAAACAATGGTCTCTTTGGAATCCTTGGAAGTAGAAGGTTGTCTGAAGTTGAAGAGCATACGGGACTTGGCGCAGCTAACAAAACTTTATAGTGTAAGTGTTGCAGGGTGCCCTCAGTTGGGCGAGTTGGAAGGAGTTGAATGTTGTCAATCATTATGGGATCTTGGGGTCTACAGTTGTCCCAAATTGGGGTGGGATGAGAGTTTAGTAGAGAGGCTGCGCCAGCAATGTACTCATGTATTTGGTGATGTATTTGGTGAGGAACCTGAGACGGATGAGTCGGAGGAACCAAATGGAAGTTGAAATGAAAGTGTTAAATTCGCA

Fln Alignment:

Contig18428___LDLGSCGKLERLPDSFGSLSNLHSLDLGGCWKLERLPDSFGSLSSLxxYFDASRCANLTISSEAFGNIRTLEHIDLSGCENVEVWPSQLGHQMSLKVVKLIGTNLKKELPSAFELPSDLEVLWIANPSRETVMPSXXXXXXXXXXXXXXXXXXXCLSASVEGSSQLSWLKVAGSPII--------------------------------------HTSEVLSDEVVYPNLKELMLEECINLVEIGTLPEALTHVELSSCYNLRSIEGLCGLPMLRELHIEKCNELEELRSVETMVSLESLEVEGCLKLKSIRDLAQLTKLYSVSVAGCPQLGELEGVECCQSLWDLGVYSCPKL
D5AB91_______________MNLVCCRKLKRLPDSLGNLTNLHHINLTLCRKLERLPDSFGSLMNLxxYLNSSCCSNLTISSDTLGNIRTLEHIDFSGCGKIELWPLQLAHQRSLKILKLTGTNI-KELPSAIEVPTDLEVLWAGSPLLDTLYPLLGDLKNLKELRLKDCRELKCLPASVGRLSQLTQLEVAGCPAIELLFKKVREQRETVRTLKFNSSIHKYMPCLQELTPQDTEISEVSFDEGVCPNLRKFILRECINLVEVGTLPNTLTYVKVSSCYNLRSIEGLSGLAMLQSLVIRKCNELHELLSVKTLVALESLYAIDCVKLKSIRELAQLTKPSHLDVSGCLELEKLEGVEYCRSLFQVVARRCPKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain