SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18427

Length: 2363 nt

UniGene Fasta

>sp_v3.0_unigene18427
ATGGGGGGGCTCCGACAACACCCATCGGACTCAATTTCCTGTGTTTTCCCTCGTACACTGTGAAAGCCCGGCCGGTAATGCGTGTCTTCGTAATAATTCCACTTGTTGCATTGCACAACAATCAATGGGAATCTGAACTTACATATACAAATTAACCTCTTCCTTACCGATCTCACACCTCATCCTCTTATTTCTTCACAGTCGCACGAAATGGGGTTAAAGATTGACTATCTAGTTGCCTGCTTCATACTCCTCTATATTTCTGGTGGAAGTGGTGTTTTTGCAACAACTTTTACTCTCTTTAACAAATGCAAGCATTCGGTGTGGCCCGGAATCCAGCCCAGCGCCGGCAGACCCGTGCTTGCCAATGGTGGGTTTCGTTTAATGCCGTCACAGACCGTGTCCATCGTTCCCCCTTCGGAATGGTCGGGACGAATATGGGGTCGCCACGGTTGTTCCTTCGATAGCAATGGAAAAGGCGTTTGTGCCACCGGTGACTGCGGAGGCCAACTCCAATGCAACGGTGCCGGAGGCGCGCCACCAGCCACGCTCGCCGAGTTCACCCTGGGCACACAGGACTTCTACGATGTGAGTCTCGTGGATGGCTACAATCTTCCCATTGCCATAGCTACCCGCAAAGGCTCCGGTAAATGCACATATGCGGGGTGCATCAGTGACTTGAACCTCAACTGCCCGCCTTCACTTCAGGTGAAGAATGAGCAGGGCTGTGTCATGGCTTGTAAGAGTGCCTGCTTTGCCTTCAGCACGCCTCAGTATTGTTGTACGGGTTCCTATGGAAATCCCCAGACATGCAGACCCACTAGTTTCTCTCGTCTATTTAAGAATGCGTGTCCCAGAGCTTACAGTTATGCCTATGACGATCCGAGCAGCTTGGTTACATGCTCTGGGGCTGACTATCTTATCACCTTCTGCCCTCATGGATAGCGACGCTGCAAACGCTTTCCACTTCTGAACATTTAAGAGCAGCTATTTGGCTGTTTAAGACCTTAGTTGCTTGAAGAAAATGTAATTGTAATTTGTGATCACTCTTCATTTATAGGTAGTTGTATTTTGTGATCATTTTTCACTTTGGGCACTTGAGAGCAGCTATTTGGGCCATAAAATCATAGCTGCCATGAAAGTGTAGTTGCAATATGTAGATTTATGGCTTTTGTGCAGACAATAGGCATGGCTTAGGTTGATATTATTAGCTACTTTATATGTATTTCAGTTGTAATGAAGCCAAATTTATAGTAAGCCAAGGTGCAAGCTATACTTAAATCAAATCTTTCTTATTTTGTTGAGCCCCACTTACATCTGAATTTCTGTGGCAGTTATGGCTAACAGATCCAAGGTCCGATTCGCAGAGACTCCTGTTCAACAGAACAATCCAGAGCGGCAGAGTTCTGGTTGGAGTTCATGGCTATTTGGTGGGCGGAGATCTAAGGATAGTCCTGAAGAGAATCACAATTCTTCTGCTAAAGTTGAAGAACACCATGCAGCACATTCAAGTAAAGCTAGTGACGATGTCAAACCAGCGGCTGAAGAAGTTGAGTATGAAGGTGTAGACAAAGAGGCGGAGGATTTCATTGAAAAACAGCGGAAGAAGTTGGAGATGGAGAGGTTGATGTCCATGAAGAGGGTGGAGAGCATGCTTAACAGAGGCCTCTGACGAGACGCCATTAAAAACTGAAAGCCCTTCCTCATAGTGTATCACGTTTTATGGTATTGTTGTGTGCATAAAGTTGTTGATTTCTAGTTTAGTTGAGTAGCTGTTAATTTCTAGTCCAGCTGAGTAGCTCAGTTGGTCTAAGTTTTTTGGGAAGTTGTTGTTCCTCTGTCATGAAACGTTAAGTCTTTGGTCTTCTGTCATTGAGGAGTTTGTGGGCTTTTTAAGTCGTTAATCTTTTGTCATTGATGAGTTTGTGGGCTTTTTAAGTTGTTGATCTTTTGTCATTGAGGAGTTGTTGATCTTCTGTAAAAGAAGCCGTTGGGCTTCTGTCATGGAGGAGTTTGTGGGCTTTTTAAGTTGTTGATCTTTTGTCATGAGGCGTTTGTGGGCTTTTCATGTTGTTGGTCTTCTGTTAAAAAAGCCGTTGGGCTTCTGTCAGGGAGGAGTTTGTAGGCTTTTGGAGTTGTTGGTCCTCTGTCAAAAAAACCCAAGTAATTGGTCTTGGGTTATTGAGGAATTTGGGCTTAGGTTAAGAAACATGGATTCAAGTTCAATTTTCCCAAGTCTTTAACGCTTTGTCAGGAGATGTGAGTTCGATTTTACTTCTACAGAGTTTTTTGGCCTTCTGTTACAAAGCATGGTTCAGATTCAATTCCCCTGAGTCTTTGGCCTCTTTTCTTCTTTCTACATT

Ace file of the UniGene sp_v3.0_unigene18427

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	thaumatin-like protein [Arabidopsis thaliana] prf\|\|2106421A thaumatin-like protein	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	0.0	-
Sma3	Thaumatin, conserved site	IPR017949	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G18250.2	-	64%
RefSeq	Arabidopsis thaliana	NP_173261.1	Thaumatin-like protein [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002317878.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYU8

Fln msg:

Fln protein: MGLKIDYLVACFILLYISGGSGVFATTFTLFNKCKHSVWPGIQPSAGRPVLANGGFRLMPSQTVSIVPPSEWSGRIWGRHGCSFDSNGKGVCATGDCGGQLQCNGAGGAPPATLAEFTLGTQDFYDVSLVDGYNLPIAIATRKGSGKCTYAGCISDLNLNCPPSLQVKNEQGCVMACKSACFAFSTPQYCCTGSYGNPQTCRPTSFSRLFKNACPRAYSYAYDDPSSLVTCSGADYLITFCPHG*

Protein Length: 246

Fln nts: ATGGGGGGGCTCCGACAACACCCATCGGACTCAATTTCCTGTGTTTTCCCTCGTACACTGTGAAAGCCCGGCCGGTAATGCGTGTCTTCGTAATAATTCCACTTGTTGCATTGCACAACAATCAATGGGAATCTGAACTTACATATACAAATTAACCTCTTCCTTACCGATCTCACACCTCATCCTCTTATTTCTTCACAGTCGCACGAA_-_ATGGGGTTAAAGATTGACTATCTAGTTGCCTGCTTCATACTCCTCTATATTTCTGGTGGAAGTGGTGTTTTTGCAACAACTTTTACTCTCTTTAACAAATGCAAGCATTCGGTGTGGCCCGGAATCCAGCCCAGCGCCGGCAGACCCGTGCTTGCCAATGGTGGGTTTCGTTTAATGCCGTCACAGACCGTGTCCATCGTTCCCCCTTCGGAATGGTCGGGACGAATATGGGGTCGCCACGGTTGTTCCTTCGATAGCAATGGAAAAGGCGTTTGTGCCACCGGTGACTGCGGAGGCCAACTCCAATGCAACGGTGCCGGAGGCGCGCCACCAGCCACGCTCGCCGAGTTCACCCTGGGCACACAGGACTTCTACGATGTGAGTCTCGTGGATGGCTACAATCTTCCCATTGCCATAGCTACCCGCAAAGGCTCCGGTAAATGCACATATGCGGGGTGCATCAGTGACTTGAACCTCAACTGCCCGCCTTCACTTCAGGTGAAGAATGAGCAGGGCTGTGTCATGGCTTGTAAGAGTGCCTGCTTTGCCTTCAGCACGCCTCAGTATTGTTGTACGGGTTCCTATGGAAATCCCCAGACATGCAGACCCACTAGTTTCTCTCGTCTATTTAAGAATGCGTGTCCCAGAGCTTACAGTTATGCCTATGACGATCCGAGCAGCTTGGTTACATGCTCTGGGGCTGACTATCTTATCACCTTCTGCCCTCATGGATAG___CGACGCTGCAAACGCTTTCCACTTCTGAACATTTAAGAGCAGCTATTTGGCTGTTTAAGACCTTAGTTGCTTGAAGAAAATGTAATTGTAATTTGTGATCACTCTTCATTTATAGGTAGTTGTATTTTGTGATCATTTTTCACTTTGGGCACTTGAGAGCAGCTATTTGGGCCATAAAATCATAGCTGCCATGAAAGTGTAGTTGCAATATGTAGATTTATGGCTTTTGTGCAGACAATAGGCATGGCTTAGGTTGATATTATTAGCTACTTTATATGTATTTCAGTTGTAATGAAGCCAAATTTATAGTAAGCCAAGGTGCAAGCTATACTTAAATCAAATCTTTCTTATTTTGTTGAGCCCCACTTACATCTGAATTTCTGTGGCAGTTATGGCTAACAGATCCAAGGTCCGATTCGCAGAGACTCCTGTTCAACAGAACAATCCAGAGCGGCAGAGTTCTGGTTGGAGTTCATGGCTATTTGGTGGGCGGAGATCTAAGGATAGTCCTGAAGAGAATCACAATTCTTCTGCTAAAGTTGAAGAACACCATGCAGCACATTCAAGTAAAGCTAGTGACGATGTCAAACCAGCGGCTGAAGAAGTTGAGTATGAAGGTGTAGACAAAGAGGCGGAGGATTTCATTGAAAAACAGCGGAAGAAGTTGGAGATGGAGAGGTTGATGTCCATGAAGAGGGTGGAGAGCATGCTTAACAGAGGCCTCTGACGAGACGCCATTAAAAACTGAAAGCCCTTCCTCATAGTGTATCACGTTTTATGGTATTGTTGTGTGCATAAAGTTGTTGATTTCTAGTTTAGTTGAGTAGCTGTTAATTTCTAGTCCAGCTGAGTAGCTCAGTTGGTCTAAGTTTTTTGGGAAGTTGTTGTTCCTCTGTCATGAAACGTTAAGTCTTTGGTCTTCTGTCATTGAGGAGTTTGTGGGCTTTTTAAGTCGTTAATCTTTTGTCATTGATGAGTTTGTGGGCTTTTTAAGTTGTTGATCTTTTGTCATTGAGGAGTTGTTGATCTTCTGTAAAAGAAGCCGTTGGGCTTCTGTCATGGAGGAGTTTGTGGGCTTTTTAAGTTGTTGATCTTTTGTCATGAGGCGTTTGTGGGCTTTTCATGTTGTTGGTCTTCTGTTAAAAAAGCCGTTGGGCTTCTGTCAGGGAGGAGTTTGTAGGCTTTTGGAGTTGTTGGTCCTCTGTCAAAAAAACCCAAGTAATTGGTCTTGGGTTATTGAGGAATTTGGGCTTAGGTTAAGAAACATGGATTCAAGTTCAATTTTCCCAAGTCTTTAACGCTTTGTCAGGAGATGTGAGTTCGATTTTACTTCTACAGAGTTTTTTGGCCTTCTGTTACAAAGCATGGTTCAGATTCAATTCCCCTGAGTCTTTGGCCTCTTTTCTTCTTTCTACATT

Fln Alignment:

Contig18427___MGLKIDYLVACFILLYISGGSGVFATTFTLFNKCKHSVWPGIQPSAGRPVLANGGFRLMPSQTVSIVPPSEWSGRIWGRHGCSFDSNGKGVCATGDCGGQLQCNGAGGAPPATLAEFTLGTQDFYDVSLVDGYNLPIAIATRKGSGKCTYAGCISDLNLNCPPSLQVKNEQGCVMACKSACFAFSTPQYCCTGSYGNPQTCRPTSFSRLFKNACPRAYSYAYDDPSSLVTCSGADYLITFCPH
A9NYU8_______________MGAKFANLAAFLSLLCIAGGSGVFATTFTLFNKCKHSVWPGIQPSAGRPVLANGGFRLMPLQAMSIVPPAGWSGRIWGRHGCSFDSDGKGLCATGDCGGQLHCNGAGGAPPATLAEITLGTQDFYDVSLVDGYNLPIAIAPRRGSGKCTYAGCISDLNLSCPPSLQVKNEQGCVMACKSACFAFSTPQYCCTGSYGNPQTCRPTSFSRLFKNACPRAYSYAYDDPNSLVTCSGADYLITFCPH

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
1005	96		3		0.98536
1081		0		93	1.0
1100	51		48		1.0
1226		0		96	1.0
1738	33		66		0.997452
1838	20	80			0.995493
1841			20	80	0.995493
1844		20		80	0.995493
1894	20			80	0.995493
1988	25	75			0.996473
1989		66		33	0.997452
1991			33	66	0.997452
1992			33	66	0.997452
2111			88	11	0.923564
2114	88		11		0.923564
2143		10		90	0.90298
2184	33		66		1.0
2315	4			95	0.999975
2318			95	4	0.999977
2319	95			4	0.999977
2328		95		4	0.999989

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain