SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18387

Length: 1357 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18387

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Extensin_2 domain containing protein	-	-	2.0e-05	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA45

Fln msg:

Fln protein: MGDSNVVAAMAFGQCPGPHVCRELSKRSFNFSVQRSARVRAWFMSLICGGLGSAEAIFAGMLTVDVTAPPPSRVAAPRSFTLASRRVRRKTSKAGGGDEGSEWYSDDGGDFGNFGGVYGSGGGGDSRRGWWYGWNGENWGSSWDDANDSAFIFVYRIACWISLSHCLHYAFKKAVRFVQNDVDNRFSD*

Protein Length: 190

Fln nts: ATGGGGAAAAGAGAGTTTGTTTTGAAATCAAACTTCTCGCTCCCGGGGTGGGATTCGAGAAGTCGGAGGATCGATCCCGGCGAAGTAGTCTTGATACCAAATTCCCAGTCCGTTGCCACCAAATGGTATGCTGCCGCGACGTCCAAACTGTGGAAGGTTTCATACGCGACTAACAATTTTTTCAATTTTTTTTCTTTCGCAGTTTAAGA_-_ATGGGCGATTCGAATGTGGTTGCTGCGATGGCATTTGGACAATGCCCGGGTCCTCACGTTTGCAGAGAATTGTCCAAACGGAGCTTTAATTTTTCAGTCCAGCGATCCGCTAGGGTTAGGGCTTGGTTCATGTCCCTCATCTGCGGCGGGCTTGGCTCGGCCGAGGCCATTTTCGCGGGCATGTTGACGGTGGACGTGACGGCACCGCCTCCGTCCCGGGTGGCAGCGCCTCGATCCTTTACCCTCGCGAGCAGGAGGGTTCGACGGAAAACTTCCAAGGCCGGTGGGGGAGATGAGGGTTCGGAGTGGTATTCAGACGATGGAGGAGATTTCGGGAACTTCGGCGGCGTTTACGGCTCCGGTGGTGGTGGGGATAGCCGAAGGGGATGGTGGTACGGGTGGAATGGCGAGAATTGGGGTTCAAGTTGGGACGATGCCAATGATTCGGCCTTCATTTTTGTCTACCGGATCGCCTGTTGGATCTCTTTGTCTCATTGCTTACATTATGCTTTCAAGAAGGCGGTTCGCTTCGTTCAAAATGATGTGGATAACAGGTTCTCTGATTGA___AAACCCTATGTTGAAAAGCCTCTATAAAATATGTACTTGTAAATACTAGGTAGTGATATTGGCTGTATGTTTTCTTTTGACAAGATGGTCATTGTTATAATGATGCGGCAATCATGCCGCCCTCAATCTTGGAATATTATAATGCAGAGTAGTCAGCTTACAACCTTCAAAAAAGATCCTTTTAACCTGCTGGTGGGGAGATCTATTCCCCGTAGTGATTGGAAATTTGAAAATTGAAATTGATCAAATTCTTCTAACCCCATACAAGGGTATGTGTATATTGTATATTTGGGGAGCTTATGCAGGCCACCACTCTCTTGATTTCGCTCACAGAATCCAGGTGCTCTAAGGCCCAAATGGAGAGGTGTTCATAACCTAAGCATGAGTGCCAACCTCGACATGGTTAAATAGTCTTTGAGGGTGCACGCCTCGTGTTTTCTGTATTACTTTTGTTGCTTAATAGGACTGGGTGAAAGATTTATTTGTGCTGGTACTGATATTGTTTATCATCGTCTTTTTCTGAAGTGTATATATTTTTGGTGCAAATGAATAATTACGATGGGGTGCTCCATCTGTTGTTT

Fln Alignment:

Contig18387___MGDSNVVAAMAFGQCPGPHVCRELSKRSFNFSVQRSARVRAWFMSLICGGLGSAEAIFAGMLTVDVTXXXXXXXXXXXXFTLASRRVRRKTSKAGGGDEGSEWYS-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDANDSAFIFVYRIACWISLSHCLHYAFKKAVRFVQNDVDNRFSD
D5AA45_______________MGDSNVAAATALSQCLGPHVCRELSHRTLNLSVQRSTRVRVWFMSLICGGLGSAEAIFAGMLAVDVTAPPPARVAPPRSFTVSTRRVRRKTSKGGGGDEGSEWFSDDGGGDFGSFGGVYGSGGGGDSRKGWWYGWNGENWGSNWDEASDSAFYFVYRIACWISLSHCLHYAFKKAVRFVQNGVDNRFSD

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
165	27	72			1.0
468			80	20	0.995493
730		90		10	0.90298
1268		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain