SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18360

Length: 1508 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18360

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	coclaurine N-methyltransferase [Arabidopsis thaliana]	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Coclaurine N-methyltransferase	-	-	3.176e-13	-

Source	Gene names
Sma3	AT4g33110; AT4g33120; At4g33110; At4g33110/F4I10_40; At4g33120; CHLREDRAFT_119132; CPLD27; F4I10.40; F4I10.50; GSVIVT00032227001; MICPUCDRAFT_45114; MICPUN_61477; OSJNBa0006A22.36; OSTLU_38159; Os06g0574100; OsI_23454; OsJ_21767; Ot10g00390; PHATRDRAFT_48

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	cyclopropane-fatty-acyl-phospholipid synthase activity	GO:0008825	Molecular Function	-
Sma3	(RS)-1-benzyl-1,2,3,4-tetrahydroisoquinoline N-methyltransferase activity	GO:0030776	Molecular Function	-
Sma3	(S)-tetrahydroprotoberberine N-methyltransferase activity	GO:0030782	Molecular Function	-
Sma3	(S)-coclaurine-N-methyltransferase activity	GO:0030794	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	lipid biosynthetic process	GO:0008610	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Mycolic acid cyclopropane synthase	IPR003333	-	0.0	-
Sma3	Methyltransferase type 11	IPR013216	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G33110.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein chr4:15972497-15974531 REVERSE LENGTH=355	65%
RefSeq	Arabidopsis thaliana	NP_001190896.1	S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002324742.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P201

Fln msg: your sequence is longer than subject: 362 - 191

Fln protein: MIETQQPRGTMNVAYNVSVRVFMRWLEANLVPDYIIRKLTRAFLARRLRLGYKLNASLQLADLMAFINALKQMPIAMNTEAAKAQHYELPTSFFKLVLGKHLKYSCGYFTRGTSTLDEAEEAMLELYCERAQVKDGQTILDIGCGWGSLILYIARKYPNNQVTGICNSKTQKLFIEEQCSEMGLCNVVIFADDISKFEIENTFDRVISIEMFEHMKNYGSLLRKISQWMKPESLLFVHHFCHKVFAFHFEDVDEDDWITRYFFAGGTMPSSNLLLYFQDHVAVVDHWLVNGKHYAQTSEEWLKNMDKNLTSIIPIFNDTYGESSAKKWMAYWRTFFIAVVELFGYNDGEEWMVSHLLFKKR*

Protein Length: 363

Fln nts: ATGGGGATGGTTGTTTTGGTGTATGTGAAGATAATGCAGAATTTCAGATTTTAAAAATGAATAGAATAGAGCCATATATTCGGAAGCTGAGTTTCATGAGTTCGAACTGAGACTACAAATGAA_-_ATGATAGAGACCCAACAACCGAGAGGAACAATGAATGTTGCATACAACGTATCTGTGAGAGTATTCATGCGTTGGTTGGAGGCAAATCTGGTTCCCGACTACATCATCAGGAAACTCACTCGAGCTTTCTTGGCCAGACGTCTGCGCCTCGGCTACAAGCTCAATGCCAGCCTTCAGCTTGCAGATCTTATGGCCTTCATCAACGCTCTAAAACAGATGCCAATAGCAATGAACACTGAAGCGGCCAAAGCGCAACACTACGAACTCCCCACTTCATTCTTCAAGCTTGTGCTTGGGAAACATCTCAAATACAGTTGTGGTTATTTTACAAGGGGTACAAGTACACTTGATGAGGCTGAGGAAGCGATGTTGGAATTATATTGTGAGAGGGCACAAGTTAAAGATGGACAAACTATTCTAGATATTGGATGTGGTTGGGGATCTCTTATTCTTTATATCGCTAGAAAGTACCCAAACAACCAAGTGACTGGCATTTGTAATTCTAAAACACAAAAGCTTTTTATAGAGGAGCAGTGTAGTGAGATGGGGCTTTGCAATGTCGTTATATTTGCTGATGATATTAGCAAATTTGAGATTGAGAATACGTTTGATCGTGTAATATCCATTGAAATGTTTGAGCACATGAAAAACTATGGAAGTCTTCTTAGGAAGATATCACAATGGATGAAGCCTGAGAGCTTACTTTTTGTTCATCATTTTTGTCACAAAGTATTTGCATTCCACTTTGAGGATGTTGATGAAGATGACTGGATTACAAGATACTTCTTCGCTGGAGGTACAATGCCGTCAAGCAACTTGCTTTTGTATTTTCAGGATCACGTTGCGGTTGTTGATCATTGGCTTGTAAATGGGAAACACTATGCTCAAACAAGTGAAGAATGGCTGAAGAATATGGATAAGAATTTGACCTCTATAATTCCCATATTTAATGATACCTATGGAGAGAGCTCGGCCAAAAAATGGATGGCCTACTGGCGAACGTTCTTCATTGCAGTGGTGGAACTTTTTGGATATAATGATGGGGAAGAATGGATGGTTTCACATTTGCTTTTTAAAAAGAGGTAA___ATTTGATTCTGATAAAATTAAAACAAAAGTAAGAATACATTTTAAATATCAAAGCAAAGATATGTCATAACTGATATATTAAGGAAATTACAGAGGCCCCTTCTGGATGGTTTTTGAGAGTAAGTGAACGTTCATTGCAGTGGTGGAACTTTTTAGATATAATGATGGGGAAGAATGGATGGTTTCAGATTTGCTTTTAAAAAAAAATAAATTTGATTCTGATATTGACAAAGTAGAATACATTTTAAATATCAAAGCAAAGATATGTCATAACTGATATATTAAGGAAATTACAGAGG

Fln Alignment:

Contig18360___MIETQQPRGTMNVAYNVSVRVFMRWLEANLVPDYIIXXXXXXXXXXXXXXGYKLNASLQLADLMAFINALKQMPIAMNTEAAKAQHYELPTSFFKLVLGKHLKYSCGYFTRGTSTLDEAEEAMLELYCERAQVKDGQTILDIGCGWGSLILYIARKYPNNQVTGICNSKTQKLFIEEQCSEMGL
A9P201_______________MMETQQPGGIMNTAYNVSVRVFLRWLEANLVPDYIIRKLTRTLLAKRLRLGYNLSACLQLADFMAFINALKQMPIAMNSEAAKAQHYELLTSFFKPVLGKHLKYSCAYFTRSTSTLNEAEEAMLELYCERAKVEDGQTVLDIGCGWGSLTLYIARKYPNNQVTGICNSTTQKVFIEEQCRYVNL

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
80			33	66	0.997452
81		66	33		0.997452
100	25		75		0.996473
102			25	75	0.996473
103		75	25		0.996473
105	75		25		0.996473
141	83		16		0.994512
142		83	16		0.994512
143		83	16		0.994512
292	90		10		0.90298
422	88			11	0.923564
455	11		77		0.968132
456	11		88		0.923564
457			88	11	0.923564
492	10		89		0.999919
729	25		75		1.0
756	10		90		0.90298
757		10		90	0.90298
879	14			85	0.993533
880		14	85		0.993533
883			85	14	0.993533
905	85		14		0.993533
906		85	14		0.993533
907			14	85	0.993533
1186		87	12		0.999964
1210	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain